View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_16 (Length: 265)
Name: NF2492_low_16
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 13025052 - 13025300
Alignment:
| Q |
1 |
gcatatcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagcnnnnnnncctccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13025052 |
gcatatcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagctttttttcctccca |
13025151 |
T |
|
| Q |
101 |
aaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattctaaggga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13025152 |
aaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggaaaataaacccaatcaccacttcgaaattctaaggga |
13025251 |
T |
|
| Q |
201 |
taataaaccttccgaatcaccttaaaatcatcactaacagagtcataac |
249 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13025252 |
taataaaccttccaaatcaccttaaaatcatcactaacagagtcataac |
13025300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 18096470 - 18096233
Alignment:
| Q |
12 |
ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagcnnnnnnncctcccaaaaactgtcat |
111 |
Q |
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||||| |||||||||||||||| || ||||||||||| |||||| | || || |||||||| |||| |||||| |||||||||||| ||||| |
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| T |
18096470 |
ccatcaagtttcctccaagaatcacgcttgaggctatacatctcccaaaatggttcatacaacttgacaatgagccccttctcctcccaaaaaccgtcat |
18096371 |
T |
|
| Q |
112 |
tcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattctaagggataataaacctt |
211 |
Q |
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||| || || | ||| ||||| ||||||||||||| |||||||||| ||| ||| ||||||||||| ||| | ||||||||||||||| |||||| |
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| T |
18096370 |
tcatgtcaaggttgtgtacatcagtctcccaaaaagggtcatccttgttcggtaaacaaacccaatcatcaccttcaaattctaagggatatctaacctt |
18096271 |
T |
|
| Q |
212 |
ccgaatcaccttaaaatcatcactaacagagtcataac |
249 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||| |
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| T |
18096270 |
ccgaatcaccttaaaatcatctgaaacacagtcataac |
18096233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 18081962 - 18081807
Alignment:
| Q |
94 |
cctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattc |
193 |
Q |
| |
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||||||||||| |||| |||| || || | ||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||| | |||||| |
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| T |
18081962 |
cctcccaaaaatcgtcaatcaagtcaaggtggtgtacatcaatctcccaaaaagggtcatccttgtccggcaaacaaacccaatcatcaccttcaaattc |
18081863 |
T |
|
| Q |
194 |
taagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataac |
249 |
Q |
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|||||||| |||||| |||||||||||| ||||||| ||||| | ||||||| |
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| T |
18081862 |
aaagggatacctaaccttacgaatcaccttataatcatctgtaacacaatcataac |
18081807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 12712113 - 12712170
Alignment:
| Q |
12 |
ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcat |
69 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
12712113 |
ccatcgattttcctccaagagttacttttgaggctatatatctcccagaaagggtcat |
12712170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 6117611 - 6117562
Alignment:
| Q |
20 |
tttcctccaagaattacttttgaggctataaatctccgagaaagggtcat |
69 |
Q |
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|
|||||||||||| ||||||||||||||||| |||||| |||||||||||| |
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|
| T |
6117611 |
tttcctccaagagttacttttgaggctatatatctcccagaaagggtcat |
6117562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 18139784 - 18139845
Alignment:
| Q |
12 |
ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaa |
73 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||| |||||| | ||||| |||||||| |
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|
| T |
18139784 |
ccatcaagtttcctccaagaatcacttttgagactatatatctcccaaaaaggttcatacaa |
18139845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 12724676 - 12724620
Alignment:
| Q |
14 |
atcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcata |
70 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| |||||| |||| || ||||| |
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| T |
12724676 |
atcgagtttcctccaagagttacttctgaggctatatatctccaagaatggttcata |
12724620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 12705508 - 12705461
Alignment:
| Q |
20 |
tttcctccaagaattacttttgaggctataaatctccgagaaagggtc |
67 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||||| |
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|
| T |
12705508 |
tttcctccaagagttacttttgaggctatataactcccagaaagggtc |
12705461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17747921 - 17747850
Alignment:
| Q |
1 |
gcatatcaaccccatcga-gtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatac |
71 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |||||| |||||||||| ||||| |||||||||||||| |
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| T |
17747921 |
gcatatcaaccccattgaagtttcctccaagagttacttatgaggctatatatctcacagaaagggtcatac |
17747850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 22535498 - 22535565
Alignment:
| Q |
5 |
atcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcataca |
72 |
Q |
| |
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|||||| ||||| |||||||||||||| |||||| | ||||| || |||||| | ||||||||||||| |
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| T |
22535498 |
atcaacaccatcaagtttcctccaagagttacttctaaggctgtatatctcccaaaaagggtcataca |
22535565 |
T |
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