View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_17 (Length: 264)
Name: NF2492_low_17
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 7138366 - 7138601
Alignment:
| Q |
19 |
tttacgttcatctcattcttcatttcagtatttcttcgtgtttttattgttagtttcatttctcgtcaatttgtttttctctgctagtagagatggttag |
118 |
Q |
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| T |
7138366 |
tttacgttcatctcattcttcatttcagtatttcttcgtgtttttattgttagtttcatttctcgtcaatttgtttttctctgctagtagagatggttag |
7138465 |
T |
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| Q |
119 |
agcagaagttgatgaaaaagacaatcttaaatgaatcatcagcttcacggatgcatcaagtgatgctttgtttgaagatatttgtctgaagtctcttcgt |
218 |
Q |
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| T |
7138466 |
agcagaagttgatgaaaaagacgatcttaaatgaatcatcagcttcacggatgcatcaagtgatgctctctttgaagatatttgtctgaagtctcttcgt |
7138565 |
T |
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| Q |
219 |
ctttaaatatttatgatgttagttaatgagcctatg |
254 |
Q |
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| T |
7138566 |
ctttaaatatttatgatgtttgttaatgagcctatg |
7138601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 8677138 - 8677224
Alignment:
| Q |
152 |
aatcatcagcttcacggatgcatcaagtgatgctttgtttgaagatatttgtctgaagtctcttcgtctttaaatatttatgatgtt |
238 |
Q |
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| T |
8677138 |
aatcatcagctttacggatgcatcaaatgatgctttgttcgaagatttttgtctgaagtttgtacgtctttaaatatttaagatgtt |
8677224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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