View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_2 (Length: 555)
Name: NF2492_low_2
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 35512588 - 35512093
Alignment:
| Q |
1 |
gcccatagattagaagatatccacttcgtaaaaggagnnnnnnnggaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512588 |
gcccatagattagaagatatccacttcgtaaaaggagtttttttggaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaa |
35512489 |
T |
|
| Q |
101 |
aacctggaagaacagcaaaagtatcgatttggccaacattaggtccatttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35512488 |
aacctggaagaacagcaaaagtatcgatttggccaacattaggtccattaagccaaagcctcagaatcctgctaatcgaggtttcggctaccagaagaaa |
35512389 |
T |
|
| Q |
201 |
tgaaccatctttgcttaaagcaacaccattgggnnnnnnnnggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtcca |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35512388 |
tgaaccatctttgcttaaagcaacaccattgggaaaaaaaaggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtcca |
35512289 |
T |
|
| Q |
301 |
gtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatcaaaatttctctacaaagcgaagttttcagttata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35512288 |
gtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatcaaaatttctctacaaagagaagttttcagttata |
35512189 |
T |
|
| Q |
401 |
tttatatttattagtttcatagacaaatattatcatgctggacattagaacaggaaatgatatatacatagacctaagagaattgcacagttttccttga |
500 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35512188 |
tttatatttattagtttcatagacaaatattatcttgctctac------------aaagatatatacatagaccaaagagaattgcacagttttccttga |
35512101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35503956 - 35503581
Alignment:
| Q |
1 |
gcccatagattagaagatatccacttcgtaaaaggagnnnnnnnggaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaa |
100 |
Q |
| |
|
||||| ||||| ||||| |||||||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
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| T |
35503956 |
gcccacagattggaagacatccactttgcaaaaggagtttctttggcatgcaaagcaacccaaaattgcccttctgaatttctccttacattgtctggaa |
35503857 |
T |
|
| Q |
101 |
aacctggaagaacagcaaaagtatcgatttggccaacattaggtccatttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaa |
200 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||| ||||| |||| ||||| |||||||||||||| |
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| T |
35503856 |
agcctggaagaacagcaaaagtatcgacttggccagcatttggtccacgaagccaaagcctcagaatcttgcaagtcgaagtttcagctaccagaagaaa |
35503757 |
T |
|
| Q |
201 |
tgaaccatctttgcttaaagcaacaccattgggnnnnnnnnggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| | |||||||| ||||||||||||| ||| |
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| T |
35503756 |
tgaaccatctttgcttaaagcaacaccattgggaaaagcaaggccacttaataagactttcacttcttttgttgacttatcatatttcattaacctccca |
35503657 |
T |
|
| Q |
301 |
gtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatcaaaatttctc |
376 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||| | | |||||| ||||||||||| ||||||||||||| |
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| T |
35503656 |
gtcttgtctccactaagaagtacaagcataaattgcctgtaaataaaagtaaccaacatataaatcaaaatttctc |
35503581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 46 - 316
Target Start/End: Complemental strand, 35491076 - 35490806
Alignment:
| Q |
46 |
gaatgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggccaacattaggtc |
145 |
Q |
| |
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|||| ||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||| || |||||||| || || ||| | || |||| |
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| T |
35491076 |
gaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtc |
35490977 |
T |
|
| Q |
146 |
catttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaatgaaccatctttgcttaaagcaacaccattgggnnnnnnnnggcc |
245 |
Q |
| |
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||| |||||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
35490976 |
catgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcc |
35490877 |
T |
|
| Q |
246 |
acttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccagtcttgtctccactaa |
316 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
35490876 |
tcttaataagaccttcacttctttggttgacttatcatatttcattaacctcccagtcttgtcgccactaa |
35490806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 367
Target Start/End: Complemental strand, 35497342 - 35497258
Alignment:
| Q |
283 |
tatttcattaaccgtccagtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatca |
367 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || |||| ||| ||||||||| | ||||||||||||||||||||||| |
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|
| T |
35497342 |
tatttcattaaccttccagtcttgtctccactaacaaataaaagcgtatattgcctgcaaataaaagtgaccaacatatagatca |
35497258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 48 - 367
Target Start/End: Complemental strand, 40161581 - 40161262
Alignment:
| Q |
48 |
atgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggccaacattaggtcca |
147 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||| || ||| ||| ||||||| ||| |
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| T |
40161581 |
atgcaaagcaacccaaaactgcccatctgaatttctccttatattgtccggataacctggaagaacggcaaaagtattgacttgaccagcattagggcca |
40161482 |
T |
|
| Q |
148 |
tttagccaaagcctcagaatcctgcaaatcgaggtttcggctaccagaagaaatgaaccatctttgcttaaagcaacaccattgggnnnnnnnnggccac |
247 |
Q |
| |
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| |||||||| | ||||||| | || |||||||||| |||| ||||| ||| |||| |||||||||||| ||||||||| || |||||| |
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| T |
40161481 |
tgaagccaaagtcgaagaatccggaaagtcgaggtttcacctactagaaggaataaaccgtctttgcttaaacaaacaccattaggataattaaggccac |
40161382 |
T |
|
| Q |
248 |
ttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccagtcttgtctccactaagagttacaagcatatgttgcctgcagacaaa |
347 |
Q |
| |
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||||||||||||| |||||||| | ||||| | ||||||||||||| |||||| ||||||||||| ||| || |||| | |||||| || ||||| |
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|
| T |
40161381 |
ttaataagaccttcacttcttttgttgacttcacatatttcattaaccttccagttttgtctccacttagaagtaaaagcggaatttgcctacaaacaaa |
40161282 |
T |
|
| Q |
348 |
agtgaccaacatatagatca |
367 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
40161281 |
aatgaccaacatatagatca |
40161262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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