View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_24 (Length: 236)
Name: NF2492_low_24
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 126831 - 126623
Alignment:
| Q |
12 |
cataggaagaaaagatgtcataaatactcataaaagtaattgaaatatgtttacagttaaaaaatcaaaatcaaatccttacaacattagcatttcattt |
111 |
Q |
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| T |
126831 |
cataggaagaaaagatgtcataaatactcataaaagtaattgaagtatgtttgcagttaaaaaatcaaaatcaaatccttacaacattagcatttcattt |
126732 |
T |
|
| Q |
112 |
caatttacctataccacaacctttaaaggagagaatgacaaaagaagtgagcaggaaatttcaacagaaattggtatagtaggttttgattttataaatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
126731 |
caatttacctataccacaacctttaaaggagagaatgacaaaagaagtgagcaggaaatttcaacagaaattggtatagtagcttttgattttataaatg |
126632 |
T |
|
| Q |
212 |
gatagtttc |
220 |
Q |
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||||||||| |
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| T |
126631 |
gatagtttc |
126623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 33058512 - 33058304
Alignment:
| Q |
12 |
cataggaagaaaagatgtcataaatactcataaaagtaattgaaatatgtttacagttaaaaaatcaaaatcaaatccttacaacattagcatttcattt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33058512 |
cataggaagaaaagatgtcataaatactcataaaagtaactgaagcatgtttgcagttaaaaaatcaaaatcaaatccttacaacattagcatttcattt |
33058413 |
T |
|
| Q |
112 |
caatttacctataccacaacctttaaaggagagaatgacaaaagaagtgagcaggaaatttcaacagaaattggtatagtaggttttgattttataaatg |
211 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||| || |||| ||||||||| |
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| T |
33058412 |
caatttacctataccacaacctttaaagtagggaatgacaaaagaagatagcaggaaatttcaacagaaataagtatagtagcttctgatattataaatg |
33058313 |
T |
|
| Q |
212 |
gatagtttc |
220 |
Q |
| |
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||||||||| |
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| T |
33058312 |
gatagtttc |
33058304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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