View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_26 (Length: 218)
Name: NF2492_low_26
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 2156063 - 2155999
Alignment:
| Q |
136 |
cagctgtggcaccttctcttgttgacattattgtggtaactccttatgattctcaaattgtattg |
200 |
Q |
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| T |
2156063 |
cagctgtggcaccttctcttgttgacattattgtggtaactccttatgattctcaaattgtattg |
2155999 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 2156190 - 2156139
Alignment:
| Q |
10 |
gagatgaagaaaaaggaggagaaaggtcacattctttatcttacttcaagaa |
61 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2156190 |
gagaagaagaaaaaggaggagaaaggtcacattctttatcttacttcaagaa |
2156139 |
T |
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