View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_3 (Length: 484)
Name: NF2492_low_3
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 469
Target Start/End: Complemental strand, 31285937 - 31285482
Alignment:
| Q |
6 |
atttagtattatttttgacataattttgctcacaagaatgtgattttttgtctcttttcctacctcaaaagtgtctatctatagagaaatttatgtcctt |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31285937 |
atttagtattattttttacataattttgctcacaagaatgtgactttttgtctcttttcctacctcaa--gtgtctatctatagagaaatttatgtcctt |
31285840 |
T |
|
| Q |
106 |
tgttaagggaaacatctctttagaagagtttatccatgaataacaatggttacattgcttcaataatcaaacataacaccatttcgctgaaatatctcta |
205 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
31285839 |
tgataagggaaacacctctttagaagagtttatccatgaataacaatggttacattgcttcaataatcaaacattacaccatttttctgaaatatctcta |
31285740 |
T |
|
| Q |
206 |
tttaaacttctctatttgcattgcttcaccatttccctgaaatatctctatttaaagttctctatttgcattgcttcaaagatctctatataaacattgc |
305 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31285739 |
tttaaagttctctatttgcattgcttcaccatttccctgaaata--------taaagttctctatttgcattgcttcaaagatctctatataaacattgc |
31285648 |
T |
|
| Q |
306 |
aagtttagattat----attttggaaattcatctaata---nnnnnnnncatgaatcttatcatggttaaatgtgtagggaagggaagtcatggaatgga |
398 |
Q |
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| T |
31285647 |
aagtttagattatattaattttggaaattcatctcatatatttttttttcatgaatcttatcatggttaaatgtgt-----agggaagtcatggaatgga |
31285553 |
T |
|
| Q |
399 |
tcaaggtcatgttaccggttactcacttgagcgtaaacctacttgccaaataagaccaatcatgagagatt |
469 |
Q |
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| T |
31285552 |
tcaaggtcatgttaccggttactcacttgagcgtaaacctacttgccaaataagaccaatcatgagagatt |
31285482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 10917528 - 10917425
Alignment:
| Q |
4 |
tgatttagtattatttttgacataattttg-ctcacaagaatgtgattttttgtctcttttcctacctcaaaagtgtctatctatagagaaatttatgtc |
102 |
Q |
| |
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|||||| |||||||||| | || || |||| || |||||||||||||||| ||| |||||| || |||| ||||||||||| |||||||||| ||||||| |
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| T |
10917528 |
tgattttgtattattttcggcagaactttgacttacaagaatgtgattttgtgtatctttttctgcctccaaagtgtctatttatagagaaacttatgtc |
10917429 |
T |
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| Q |
103 |
cttt |
106 |
Q |
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|||| |
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| T |
10917428 |
cttt |
10917425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 31362353 - 31362409
Alignment:
| Q |
6 |
atttagtattatttttgacataattttg-ctcacaagaatgtgattttttgtctctt |
61 |
Q |
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||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |
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| T |
31362353 |
atttagtattattttcgacagaattttgactcacaagaatgtgattttttgtctctt |
31362409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 34302738 - 34302668
Alignment:
| Q |
124 |
tttagaagagtttatccatgaata---acaatggttacattgcttcaataatcaaacataacaccatttcg |
191 |
Q |
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||||||||||||| | ||| |||| ||||||||||||||||||||||| |||| ||| ||| ||||||| |
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| T |
34302738 |
tttagaagagtttcttcataaatagacacaatggttacattgcttcaatagtcaaccattacatcatttcg |
34302668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 8367213 - 8367107
Alignment:
| Q |
35 |
tcacaagaatgtgattttttgtctcttttcctacctcaaaagtgtc--tatcta-tagagaaatttatgtccttt--gttaagggaaacatctctttaga |
129 |
Q |
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||||||||||||||||||||||||| ||| || ||| ||||||||| ||| || || | ||||||||||||||| || ||| |||||||||||||||| |
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| T |
8367213 |
tcacaagaatgtgattttttgtctcattttctgccttaaaagtgtctttatttattataaaaatttatgtccttttggtaaagagaaacatctctttaga |
8367114 |
T |
|
| Q |
130 |
agagttt |
136 |
Q |
| |
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||||||| |
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|
| T |
8367113 |
agagttt |
8367107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 14218994 - 14219044
Alignment:
| Q |
4 |
tgatttagtattatttttgacataattttg-ctcacaagaatgtgattttt |
53 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||| |||||||||||| |
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| T |
14218994 |
tgatttagtattatttttagcataattttgactcacaataatgtgattttt |
14219044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 30108295 - 30108344
Alignment:
| Q |
4 |
tgatttagtattatttttgacataattttg-ctcacaagaatgtgatttt |
52 |
Q |
| |
|
||||||||||||||||| | |||||| ||| ||||||||||||||||||| |
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| T |
30108295 |
tgatttagtattattttcggcataatgttgactcacaagaatgtgatttt |
30108344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 46324447 - 46324386
Alignment:
| Q |
76 |
gtgtctatctatagagaaatttatgtcct-ttgttaagggaaacatctctttagaagagttt |
136 |
Q |
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|||||||| |||||| ||| ||||||||| |||| ||| |||||| |||||||||||||||| |
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| T |
46324447 |
gtgtctatatatagaaaaacttatgtcctcttgtgaagagaaacaactctttagaagagttt |
46324386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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