View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_4 (Length: 466)
Name: NF2492_low_4
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 51376374 - 51376286
Alignment:
| Q |
19 |
aatggagccattgttcaatggaatagggaaaatgctaggtgggctgtcatgaatgatggagtttatgtatgctattctcgtttctgagt |
107 |
Q |
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| T |
51376374 |
aatggagccattgttcaatgggatagggaaaatgctaggtgggctgtcatgaatgatggagtttatgtatgctattctcgtttctgagt |
51376286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 51376286 - 51376229
Alignment:
| Q |
149 |
tcataggtaataggtattgaaggaacacttatgtaaatgactaaaagaggattggaaa |
206 |
Q |
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| T |
51376286 |
tcataggtaataggtattgaaggaacacttctgtaaatgaataaaagaggattggaaa |
51376229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 51850250 - 51850302
Alignment:
| Q |
19 |
aatggagccattgttcaatggaataggg-aaaatgctaggtgggctgtcatga |
70 |
Q |
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| T |
51850250 |
aatggagccattgttcaaagggataggggaaaatgctatgtgggctgtcatga |
51850302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 51821029 - 51821074
Alignment:
| Q |
224 |
cttttaggtaagcctttattccatcatgaaagaaatttgactcttg |
269 |
Q |
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| T |
51821029 |
cttttaggtaagtctttattatatcatgaaagaaaattgactcttg |
51821074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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