View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_5 (Length: 447)
Name: NF2492_low_5
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 374225 - 374520
Alignment:
| Q |
16 |
atcaacaaacaaaattcaataattaaaattaataatttactaacttcaataacttccaaggtcctcaattggcacaaacaccccaccattcacaaaagga |
115 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374225 |
atcaacaaacaaaattcaataattaaaattcataaattactaacttcaataacttccaaggtcctcaattggcacaaacaccccaccattcacaaaagga |
374324 |
T |
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| Q |
116 |
acaaatacacaaggaaaattaaaacccaatagag-nnnnnnnnnnnnnnctatcaaactttgagaataaaaacattcataaacatcctcaccacccccac |
214 |
Q |
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| T |
374325 |
acaaatacacaaggaaaattaaaacccaatagagaaaaaaaaataaaaactatcaaactttgagaataaaaacattcataaacatcctcaccacccccac |
374424 |
T |
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| Q |
215 |
----------------------aattaagtctaaaagaatggctcaaaaatctcaacaaatgactgaaaacccaagttttgataaactttgagaac |
288 |
Q |
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| T |
374425 |
aataggaactaacagactcaaaaattaagtctaaaagaatggctcaaaaatctcaacaaatgactgaaaacccaagttttgataaactttgagaac |
374520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 407
Target Start/End: Original strand, 374580 - 374639
Alignment:
| Q |
348 |
cccaatagaatgaataacattaccccctcaaaaaatttcaaacccagatgggtttttgac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374580 |
cccaatagaatgaataacattaccccctcaaaaaatttcaaacccagatgggtttttgac |
374639 |
T |
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