View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2492_low_7 (Length: 410)

Name: NF2492_low_7
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2492_low_7
NF2492_low_7
[»] chr6 (1 HSPs)
chr6 (10-389)||(19747022-19747401)
[»] chr8 (3 HSPs)
chr8 (24-100)||(11345431-11345507)
chr8 (24-100)||(11359309-11359385)
chr8 (24-99)||(11338905-11338980)
[»] chr5 (3 HSPs)
chr5 (299-350)||(23086139-23086190)
chr5 (49-102)||(23086420-23086473)
chr5 (147-189)||(23086318-23086360)
[»] chr4 (5 HSPs)
chr4 (33-93)||(3557376-3557436)
chr4 (34-88)||(3565399-3565453)
chr4 (34-79)||(1686646-1686691)
chr4 (309-345)||(10554167-10554203)
chr4 (309-345)||(10571897-10571933)
[»] chr7 (1 HSPs)
chr7 (26-66)||(24030965-24031005)


Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 19747022 - 19747401
Alignment:
Q  10 tgaatacatccaataggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccatgaaccgttgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19747022 tgaatacatccaataggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccatgaaccgctgt 19747121  T
Q  110 ggttcgcatcatcttcttctgcccgatacgccaccaacttgtaagttcctgttgaaatatcacaaccaaaaccgaacttgaaagtttctgatgaagtgtt 209  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747122 ggttcgcatcatcttcttctgcccgatatgccaccaacttgtaagttcctgttgaaatatcacaaccaaaaccgaacttgaaagtttctgatgaagtgtt 19747221  T
Q  210 gtagcatcggaaagtccctaattcttcagatattgttctcgtggcaggattccataaacaaaaccagtattttgtatacttcctatggagagaatggaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747222 gtagcatcggaaagtccctaattcttcagatattgttctcgtggcaggattccataaacaaaaccagtattttgtatacttcctatggagagaatggaaa 19747321  T
Q  310 atcaagcaaaacaatccattgcaggaaccaacaacctgacaagtatcattcgaatcatgtaaattgtcaccaaaaacagt 389  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  19747322 atcaagcaaaacaatccattgcaggaaccaataacctgacaagtgtcattcaaatcatggaaattgtcaccaaaaacagt 19747401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 11345431 - 11345507
Alignment:
Q  24 aggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccatg 100  Q
    |||||||||||| ||||| | ||||||||||||||||| |||||| ||||||| || ||||||| ||||||||||||    
T  11345431 aggaatcaaaggaaaactgttaatatttctccaacaatcatcactcaaactgagaactctgacccgacttctccatg 11345507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 11359309 - 11359385
Alignment:
Q  24 aggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccatg 100  Q
    |||||||| ||| ||||| || |||||||||||||||| ||| || ||||||| |||||||||||||||||||||||    
T  11359309 aggaatcacaggaaaactgtcgatatttctccaacaatcatcgctcaaactgagaattctgacctgacttctccatg 11359385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 11338905 - 11338980
Alignment:
Q  24 aggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccat 99  Q
    |||||||||||| ||||| | ||||||||||||||||| |||||| ||||||| || |||||| ||||||||||||    
T  11338905 aggaatcaaaggaaaactgttaatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccat 11338980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 23086190 - 23086139
Alignment:
Q  299 gagaatggaaaatcaagcaaaacaatccattgcaggaaccaacaacctgaca 350  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  23086190 gagaatggaaaagcaagcaaagcaatccattgcaggaaccaacaacatgaca 23086139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 23086473 - 23086420
Alignment:
Q  49 tttctccaacaattatcacttaaactgaaaattctgacctgacttctccatgaa 102  Q
    |||||||||||||||||||  ||||||||||||||||||| || | ||||||||    
T  23086473 tttctccaacaattatcaccaaaactgaaaattctgacctcacatttccatgaa 23086420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 23086360 - 23086318
Alignment:
Q  147 cttgtaagttcctgttgaaatatcacaaccaaaaccgaacttg 189  Q
    |||||||||||| |||||||||||||||||||||  |||||||    
T  23086360 cttgtaagttccggttgaaatatcacaaccaaaagtgaacttg 23086318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 3557436 - 3557376
Alignment:
Q  33 agggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgactt 93  Q
    ||||||||| |||||||||||||||  |||||||| ||||||||||| ||| |||| ||||    
T  3557436 agggaaactttcaatatttctccaaacattatcacctaaactgaaaactctaacctcactt 3557376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 3565453 - 3565399
Alignment:
Q  34 gggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacct 88  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||| ||| ||||    
T  3565453 gggaaactttcaatatttctccaaacattatcacctaaactgaaaactctcacct 3565399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 1686646 - 1686691
Alignment:
Q  34 gggaaactctcaatatttctccaacaattatcacttaaactgaaaa 79  Q
    |||||||| |||||||||||||||  |||||||| |||||||||||    
T  1686646 gggaaactttcaatatttctccaaacattatcacctaaactgaaaa 1686691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 10554167 - 10554203
Alignment:
Q  309 aatcaagcaaaacaatccattgcaggaaccaacaacc 345  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  10554167 aatcaagcacaacaatccattgcatgaaccaacaacc 10554203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 10571897 - 10571933
Alignment:
Q  309 aatcaagcaaaacaatccattgcaggaaccaacaacc 345  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  10571897 aatcaagcacaacaatccattgcatgaaccaacaacc 10571933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 24031005 - 24030965
Alignment:
Q  26 gaatcaaagggaaactctcaatatttctccaacaattatca 66  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  24031005 gaatcaaagggaaattgttaatatttctccaacaattatca 24030965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University