View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2493_high_10 (Length: 246)

Name: NF2493_high_10
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2493_high_10
NF2493_high_10
[»] chr6 (6 HSPs)
chr6 (26-105)||(29201195-29201276)
chr6 (156-231)||(26653347-26653422)
chr6 (156-231)||(26759315-26759390)
chr6 (153-205)||(6797078-6797130)
chr6 (153-186)||(1875146-1875179)
chr6 (153-197)||(23652672-23652716)
[»] chr4 (8 HSPs)
chr4 (153-219)||(51164568-51164634)
chr4 (153-205)||(25064123-25064175)
chr4 (153-227)||(30617606-30617680)
chr4 (153-197)||(52355897-52355941)
chr4 (153-240)||(8069927-8070013)
chr4 (153-204)||(27981723-27981773)
chr4 (153-216)||(39308118-39308181)
chr4 (153-210)||(7209251-7209308)
[»] chr1 (13 HSPs)
chr1 (153-205)||(41024832-41024884)
chr1 (153-240)||(26758486-26758573)
chr1 (153-216)||(38081631-38081694)
chr1 (153-211)||(37633679-37633737)
chr1 (153-197)||(9424580-9424623)
chr1 (153-197)||(30561987-30562030)
chr1 (157-211)||(22915208-22915262)
chr1 (153-211)||(42489235-42489293)
chr1 (162-218)||(6811717-6811773)
chr1 (156-216)||(37209844-37209904)
chr1 (153-209)||(37596500-37596556)
chr1 (157-209)||(40619552-40619604)
chr1 (153-197)||(43457951-43457995)
[»] chr2 (9 HSPs)
chr2 (153-235)||(4570777-4570859)
chr2 (153-211)||(11563478-11563536)
chr2 (153-227)||(31597140-31597213)
chr2 (156-199)||(2764132-2764175)
chr2 (155-216)||(2985249-2985309)
chr2 (153-209)||(37624993-37625049)
chr2 (153-211)||(39187513-39187571)
chr2 (153-205)||(35977351-35977403)
chr2 (178-206)||(38606911-38606939)
[»] chr7 (9 HSPs)
chr7 (167-228)||(2456738-2456799)
chr7 (152-209)||(6248449-6248505)
chr7 (152-190)||(6181637-6181675)
chr7 (157-227)||(46923653-46923723)
chr7 (153-216)||(31765400-31765463)
chr7 (153-211)||(24393533-24393591)
chr7 (162-231)||(40720404-40720473)
chr7 (153-209)||(39927693-39927748)
chr7 (153-197)||(46875227-46875271)
[»] chr3 (6 HSPs)
chr3 (153-197)||(16277624-16277668)
chr3 (153-205)||(48953928-48953980)
chr3 (153-216)||(50170515-50170578)
chr3 (155-216)||(41928852-41928913)
chr3 (153-205)||(46010384-46010436)
chr3 (153-227)||(54261839-54261913)
[»] chr5 (3 HSPs)
chr5 (153-216)||(22874245-22874308)
chr5 (153-227)||(15595024-15595097)
chr5 (167-211)||(28735344-28735388)
[»] scaffold1173 (1 HSPs)
scaffold1173 (154-211)||(148-205)
[»] chr8 (4 HSPs)
chr8 (157-209)||(11599638-11599690)
chr8 (161-216)||(12733791-12733846)
chr8 (153-210)||(8059958-8060015)
chr8 (153-197)||(44328525-44328569)


Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 29201276 - 29201195
Alignment:
Q  26 aaaaacacatgccctcgatttaaattttaaccacaccatcatt--aacagtactgaagaaattggatggccatggaagaagt 105  Q
    ||||||||||||| | ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  29201276 aaaaacacatgcctttgatttaagttttaaccacaccatcattgaaacagtactgaagaaattggatggccatggaagaagt 29201195  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 26653347 - 26653422
Alignment:
Q  156 atattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatatttagct 231  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| || || ||||||||    
T  26653347 atattgaaaatataacttttgaaacttttaagacattgaatgtacaattttcaagaaaaaagttttacatttagct 26653422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 26759315 - 26759390
Alignment:
Q  156 atattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatatttagct 231  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| || || ||||||||    
T  26759315 atattgaaaatataacttttgaaacttttaagacattgaatgtacaattttcaagaaaaaagttttacatttagct 26759390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 6797130 - 6797078
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattt 205  Q
    |||||||| |||| | ||||||||||||||||||  |||||||||||||||||    
T  6797130 tttatattgaaaatacaacttttgaaacttttaatgcattgaatgtataattt 6797078  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 1875179 - 1875146
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaa 186  Q
    ||||||||||||| ||||||||||||||||||||    
T  1875179 tttatattaaaaatataacttttgaaacttttaa 1875146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 23652716 - 23652672
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    |||||| | |||| |||||||||||||||||||||| ||||||||    
T  23652716 tttatactgaaaaaataacttttgaaacttttaagatattgaatg 23652672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 51164568 - 51164634
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaattt 219  Q
    |||||||| |||| ||||||||||||||||||||||||||||||| | | ||||||||| |||||||    
T  51164568 tttatattgaaaaaataacttttgaaacttttaagacattgaatgcacacttttcaagaaaaaattt 51164634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 25064123 - 25064175
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattt 205  Q
    |||||||| |||| |||||||||||||||||||||||||||||| || |||||    
T  25064123 tttatattgaaaagataacttttgaaacttttaagacattgaatttacaattt 25064175  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 30617606 - 30617680
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatattt 227  Q
    |||||||| |||  |||||||||||||||||||||| |||||||| | ||||| ||||| |||| || |||||||    
T  30617606 tttatattgaaaggataacttttgaaacttttaagagattgaatgcacaatttccaagaaaaaacttctatattt 30617680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 52355897 - 52355941
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    |||||| | |||| |||||||||||||||||||||||||||||||    
T  52355897 tttataatgaaaatataacttttgaaacttttaagacattgaatg 52355941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 8070013 - 8069927
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatatttagctctttaactt 240  Q
    |||||||| |||| |||| ||||||||||||||| || ||||||||| || |||||||| |||| || |||||||  || ||||||||    
T  8070013 tttatattgaaaatataatttttgaaacttttaaaactttgaatgtacaa-tttcaagaaaaaacttatatatttgactttttaactt 8069927  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 27981723 - 27981773
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataatt 204  Q
    |||||||| |||| |||| |||||||||||||||||||||||||||| ||||    
T  27981723 tttatattgaaaatataa-ttttgaaacttttaagacattgaatgtacaatt 27981773  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 39308118 - 39308181
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    |||| ||||||||||||||||| |||| |||||||| ||| |||| |||||||| |||| ||||    
T  39308118 tttaaattaaaaacataactttagaaatttttaagatattaaatgcataatttttaagaaaaaa 39308181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 7209308 - 7209251
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaag 210  Q
    |||||||| |||  |||||||||| |||||||||||||||||||| | || |||||||    
T  7209308 tttatattgaaagtataacttttgcaacttttaagacattgaatgcacaagtttcaag 7209251  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 41024832 - 41024884
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattt 205  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  41024832 tttatattgaaaatataacttttgaaacttttaagacattgaatgtacaattt 41024884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 26758573 - 26758486
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatatttagctctttaactt 240  Q
    |||||||| |||| |||||||||||||||||||| |||||||||| | ||||||||| | || |||| ||||||| |||  |||||||    
T  26758573 tttatattgaaaatataacttttgaaacttttaacacattgaatgcacaattttcaaaaaaacatttatatatttggcttcttaactt 26758486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 38081631 - 38081694
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    |||||||| |||| ||||||||||||||||||||||||||||||| | ||||| ||||| ||||    
T  38081631 tttatattgaaaagataacttttgaaacttttaagacattgaatgcacaatttccaagaaaaaa 38081694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 37633679 - 37633737
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    ||||| || |||| ||||||||||||||||||||||||||||||| | |||||| ||||    
T  37633679 tttatgttgaaaatataacttttgaaacttttaagacattgaatgcacaatttttaaga 37633737  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 9424623 - 9424580
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  9424623 tttatattaaaaatataacttttgaaacttttaa-acattgaatg 9424580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 30561987 - 30562030
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  30561987 tttatattaaaaagataacttttgaaa-ttttaagacattgaatg 30562030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 22915208 - 22915262
Alignment:
Q  157 tattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    |||| |||| ||||||||||||| ||||||| ||||||||||| || ||||||||    
T  22915208 tattgaaaagataacttttgaaatttttaagtcattgaatgtaaaactttcaaga 22915262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 42489235 - 42489293
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    ||||||||||||  |||||||||| ||||||||||||| |||||| | || ||||||||    
T  42489235 tttatattaaaagtataacttttgcaacttttaagacaatgaatgcacaagtttcaaga 42489293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 6811717 - 6811773
Alignment:
Q  162 aaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatt 218  Q
    |||| |||||||||||||||| |||||||||||||| | || |||||| | ||||||    
T  6811717 aaaatataacttttgaaacttgtaagacattgaatgcacaactttcaaaaaaaaatt 6811773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 37209904 - 37209844
Alignment:
Q  156 atattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    ||||| |||| |||||||||||||||||||||| ||| |||| | ||||| ||||| ||||    
T  37209904 atattgaaaagataacttttgaaacttttaagatattaaatgcacaatttccaagaaaaaa 37209844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 37596500 - 37596556
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaa 209  Q
    ||||||||||||| |||| ||||| || |||||||| |||||||||| || ||||||    
T  37596500 tttatattaaaaatataatttttgcaatttttaagatattgaatgtacaagtttcaa 37596556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 40619552 - 40619604
Alignment:
Q  157 tattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaa 209  Q
    ||||||||| |||| |||| |||||||||||| |||||||| | |||||||||    
T  40619552 tattaaaaaaataaatttttaaacttttaagatattgaatgcacaattttcaa 40619604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 43457951 - 43457995
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    |||||||| |||  |||||||||| ||||||||||||||||||||    
T  43457951 tttatattgaaagtataacttttgcaacttttaagacattgaatg 43457995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 4570777 - 4570859
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatatttagctcttt 235  Q
    |||| |||||||| |||| |||| || |||||||||||||||||||| |||||| || || || ||| |||||||||||||||    
T  4570777 tttaaattaaaaatataagttttaaatcttttaagacattgaatgtacaatttttaaaattaattttttatatttagctcttt 4570859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 11563536 - 11563478
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||| | |||||||||||    
T  11563536 tttatattgaaaatataacctttgaaacttttaagacattgaatgcacaattttcaaga 11563478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 31597213 - 31597140
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatattt 227  Q
    ||||||||||||| |||||||||||| ||||||||| ||| |||||| || |||||||| ||||||| |||||||    
T  31597213 tttatattaaaaagataacttttgaagcttttaagatattaaatgtacaa-tttcaagaaaaaatttatatattt 31597140  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 2764175 - 2764132
Alignment:
Q  156 atattaaaaacataacttttgaaacttttaagacattgaatgta 199  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  2764175 atattgaaaagataacttttgaaacttttaagacattgaatgta 2764132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 2985309 - 2985249
Alignment:
Q  155 tatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    ||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||| ||||    
T  2985309 tatattaaaaatataacttt-gaaacttttaagacattgaatgcacaatttttaagaaaaaa 2985249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 37625049 - 37624993
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaa 209  Q
    |||||||| |||| ||||||||| |||||||||||| |||||||| | |||||||||    
T  37625049 tttatattgaaaatataacttttaaaacttttaagatattgaatgcacaattttcaa 37624993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 39187571 - 39187513
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    |||||||| |||| |||||||||| ||||||||||| |||||||| | || ||||||||    
T  39187571 tttatattgaaaatataacttttgcaacttttaagatattgaatgcacaagtttcaaga 39187513  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 35977403 - 35977351
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattt 205  Q
    |||||||| |||| ||||||||| ||| ||| ||||||||||||| |||||||    
T  35977403 tttatattgaaaaaataactttttaaattttcaagacattgaatgcataattt 35977351  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 38606911 - 38606939
Alignment:
Q  178 aacttttaagacattgaatgtataatttt 206  Q
    |||||||||||||||||||||||||||||    
T  38606911 aacttttaagacattgaatgtataatttt 38606939  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 2456799 - 2456738
Alignment:
Q  167 ataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatattta 228  Q
    |||||||||||||||||||| | ||||||||| |||||||||||| |||| || ||||||||    
T  2456799 ataacttttgaaacttttaatatattgaatgtgtaattttcaagaaaaaacttttatattta 2456738  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 6248449 - 6248505
Alignment:
Q  152 gtttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaa 209  Q
    ||||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||    
T  6248449 gtttatattaaaaacataa-ttttgaaacttttaagacattaaaagtacaattttcaa 6248505  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 6181637 - 6181675
Alignment:
Q  152 gtttatattaaaaacataacttttgaaacttttaagaca 190  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  6181637 gtttatattgaaaacataacttttgaaacttttaagaca 6181675  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 46923653 - 46923723
Alignment:
Q  157 tattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatattt 227  Q
    |||| |||| |||||||||||||||||||| ||||| |||| | ||||||||||| |||| || |||||||    
T  46923653 tattcaaaatataacttttgaaacttttaaaacattaaatgcacaattttcaagaaaaaacttctatattt 46923723  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 31765400 - 31765463
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    |||||||| |||| |||||||||||||||||||||||||   ||||| ||||| ||||| ||||    
T  31765400 tttatattgaaaagataacttttgaaacttttaagacatcagatgtacaatttccaagaaaaaa 31765463  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 24393591 - 24393533
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    |||||||| |||  |||| ||||| |||||||||||||||||||| |||| ||||||||    
T  24393591 tttatattgaaagtataatttttgcaacttttaagacattgaatggataagtttcaaga 24393533  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 40720473 - 40720404
Alignment:
Q  162 aaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatatttagct 231  Q
    |||| |||| |||| |||||||||||| ||| |||| ||||||||||| |||||| ||  ||||||||||    
T  40720473 aaaatataatttttaaaacttttaagatattaaatgcataattttcaaaataaaagttccatatttagct 40720404  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 39927748 - 39927693
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaa 209  Q
    ||||||||||||| ||||||||||||| |||||||| | | |||| |||||||||||    
T  39927748 tttatattaaaaatataacttttgaaatttttaagata-taaatgcataattttcaa 39927693  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 46875271 - 46875227
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||    
T  46875271 tttatattaaaaatgtaactttttaaatttttaagacattgaatg 46875227  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 16277668 - 16277624
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  16277668 tttatattaaaaatataacttttgaaacttttaaggcattgaatg 16277624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 48953980 - 48953928
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattt 205  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||| |||||    
T  48953980 tttatattgaaaagataacttttgaaacttttaaaacattgaatgtacaattt 48953928  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 50170515 - 50170578
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||| | ||||| ||||| ||||    
T  50170515 tttatattgaaaagataacttttgaaatttttaagacattgaatgcacaatttccaagaaaaaa 50170578  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 41928852 - 41928913
Alignment:
Q  155 tatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| || | ||||||||| ||||    
T  41928852 tatattaaaaatataacttttgaaaattttaagacattaaatctacatttttcaagaaaaaa 41928913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 46010436 - 46010384
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattt 205  Q
    ||||||||||||| ||||||||| ||| |||||||| |||||||| |||||||    
T  46010436 tttatattaaaaatataacttttaaaatttttaagatattgaatgcataattt 46010384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 54261839 - 54261913
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatattt 227  Q
    ||||||||||||   ||||||||| ||||||||||| |||||||| | || |||||||| ||| ||| |||||||    
T  54261839 tttatattaaaagtctaacttttgcaacttttaagatattgaatgcacaagtttcaagaaaaactttctatattt 54261913  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 22874308 - 22874245
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    ||||||||||||| ||||||||||||| |||||| | |||||||| | ||||||||| ||||||    
T  22874308 tttatattaaaaatataacttttgaaatttttaaaaaattgaatgcacaattttcaaaataaaa 22874245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 15595024 - 15595097
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaatttgtatattt 227  Q
    |||||||| |||| |||||||||||||||||| |||||||||||| | |||||| |||| |||| || |||||||    
T  15595024 tttatattgaaaaaataacttttgaaactttt-agacattgaatgcacaattttaaagaaaaaacttttatattt 15595097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 28735344 - 28735388
Alignment:
Q  167 ataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    |||||||||| |||||||||||||||||||||  || ||||||||    
T  28735344 ataacttttgcaacttttaagacattgaatgtgcaagtttcaaga 28735388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 148 - 205
Alignment:
Q  154 ttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaaga 211  Q
    |||||||||||  |||||||||||||||||||||| |||||||| | || ||||||||    
T  148 ttatattaaaagtataacttttgaaacttttaagatattgaatgcacaagtttcaaga 205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 11599690 - 11599638
Alignment:
Q  157 tattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaa 209  Q
    ||||||||| ||||||||| |||||||||||||||| |||| | |||||||||    
T  11599690 tattaaaaagataacttttcaaacttttaagacattaaatgcacaattttcaa 11599638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 12733846 - 12733791
Alignment:
Q  161 aaaaacataacttttgaaacttttaagacattgaatgtataattttcaagataaaa 216  Q
    ||||| |||||||||||||||||||||||||| |||| |||  |||||||| ||||    
T  12733846 aaaaagataacttttgaaacttttaagacatttaatgcatatgtttcaagaaaaaa 12733791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 8060015 - 8059958
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatgtataattttcaag 210  Q
    |||||||||||   ||||||||||| ||||||||||||||||||| | ||||| ||||    
T  8060015 tttatattaaatttataacttttgagacttttaagacattgaatgcacaatttccaag 8059958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 44328569 - 44328525
Alignment:
Q  153 tttatattaaaaacataacttttgaaacttttaagacattgaatg 197  Q
    ||||||||||||  |||||||||| || |||||||||||||||||    
T  44328569 tttatattaaaagtataacttttgcaatttttaagacattgaatg 44328525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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