View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2493_high_3 (Length: 366)
Name: NF2493_high_3
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2493_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 33815065 - 33815378
Alignment:
| Q |
17 |
agggaaccaagacaaataaaaacaacacatatcaaatcatcttctaaaatgaagtagctacattcaatagtccatttttctgagacatgtcaaaatttta |
116 |
Q |
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| T |
33815065 |
agggaaccaagacaaataaaaacaacacatatcaaatcatcttctaaaatgaagtagctacattcaatagtccatttttctgagacatgtcaaaatttta |
33815164 |
T |
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| Q |
117 |
atcaatttgttgagcaatgttaatcagattatgcataaaccctaaacattgtcaagttttgaataatgtcactggttcaatgtgactgagtttcctgcat |
216 |
Q |
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| T |
33815165 |
atcaatttgttgagcaatgttaatcagattatgcataaaccctaaacattgtcaagttttgaataatgtcactggttcaatgtgactgagtttcctgcat |
33815264 |
T |
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| Q |
217 |
atggaagcttgaaggatgatgaaaatatggttgaaaagagaagcgattaccaggatggtgaagatatgagaagcttacctgcagaaaagaagcaatggaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815265 |
atggaagcttgaaggatgatgaaaatatggttgaaaagagaagcgattaccaggatggtgaagatatgagaagcttacctgcagaaaagaagcaatggaa |
33815364 |
T |
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| Q |
317 |
gaagataaagccac |
330 |
Q |
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|||||||||||||| |
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| T |
33815365 |
gaagataaagccac |
33815378 |
T |
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