View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2493_high_7 (Length: 250)
Name: NF2493_high_7
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2493_high_7 |
 | |
|
| [»] scaffold1295 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 35873398 - 35873570
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35873398 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
35873497 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc--------ggttatatacctagtttaatata |
180 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
35873498 |
ttcttgggcaaattgcaagcagtattttgatgaaacccgtgcaacgcacgggttatatacctagtttaatata |
35873570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 48269313 - 48269454
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
48269313 |
atggtgcatttaaaatatcataaacaatattatatttcaaggtgggatgaataatgtggaaaaattgatggatccaattaaaaatattatttgggtatgg |
48269412 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48269413 |
ttcttaggcaaattgcaagcagtattttgattaaacccgtgc |
48269454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 52352852 - 52352965
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52352852 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggtatgg |
52352951 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
52352952 |
ttcatgggcaaatt |
52352965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 39064164 - 39064023
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39064164 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatga |
39064065 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39064064 |
ttcttgggcaaattgcaagcagtattttgatcaaatccgtgc |
39064023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 47230931 - 47230790
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47230931 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtggaaaaattggtggatccaattaaaaatattgtttgggtatgg |
47230832 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47230831 |
ttcttgggcaaattgcaagcaatattttgatcaaacccgtgc |
47230790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 25416591 - 25416478
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25416591 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggtatgg |
25416492 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
25416491 |
ttcatgggcaaatt |
25416478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 9934321 - 9934183
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||| |||| ||||| |
|
|
| T |
9934321 |
atggtgtagttaaaatattagaaacaatattatatttcaaggtggggtggataatgtgggaaaattggtagaacaaattaaaaatattgattggctatgg |
9934222 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| | ||| |||| ||| |||||||||||||||||| |
|
|
| T |
9934221 |
ttcttggacaagctgca---agtgttttgatcaaacccgtgc |
9934183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 5434418 - 5434559
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||| || ||| | | |
|
|
| T |
5434418 |
atggtgcatttaaaatatcataaacaatattatatttcaaaatggagtggataatgtggcaaaattggtggatcaaattaaaaatattggttaggtgtag |
5434517 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||| | | |||||||||||| ||||||||||||||| |||| |
|
|
| T |
5434518 |
ttcctgagaaaattgcaagcaatattttgatcaaaccagtgc |
5434559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 53827413 - 53827272
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53827413 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgagtatga |
53827314 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53827313 |
ttcttgggcaaattgcaagcagtattttgatcaaacccgtgc |
53827272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 46096342 - 46096483
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46096342 |
atggtgcatttaaaatattagaaacaatattatattttaaggtaggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggtatgg |
46096441 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46096442 |
ttcttgggcaaattgcaagcagtattttgatcaaacccgtgc |
46096483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 20040228 - 20040368
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| || |
|
|
| T |
20040228 |
atggtgcatttaaaatattagaaacaatattatatttcaagttggggtagataatgtgggaaaattggtggatcaaattaaaaatattgcttgggtaggg |
20040327 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
|| ||||||||||||| ||| |||||||||| |||| ||||| |
|
|
| T |
20040328 |
tt-ttaggcaaattgctagccgtattttgattaaactcgtgc |
20040368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 21630027 - 21629890
Alignment:
| Q |
20 |
tgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatggttct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
21630027 |
tgcatttaaaatattagaaacaatattatattttaaggtaggatgaataatgtggaaaaactggtggatcaaattaaaaatattgcttgggtatggttct |
21629928 |
T |
|
| Q |
120 |
taggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
21629927 |
tgagcaaattgcaagcagtattttaatcaaacctgtgc |
21629890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 2502018 - 2501956
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2502018 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaa |
2501956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 46138843 - 46138911
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggt |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
46138843 |
atggtgcatttaaaatattagaaacaatattatattttaaggtaggatggataatgtaggaaaattggt |
46138911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 13874311 - 13874253
Alignment:
| Q |
67 |
taatgtgggaaaattggtggatccaattaaaaatattgtttgggtatggttcttaggca |
125 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
13874311 |
taatgtagtaaaattggtggatcaaattaaaaatattgtttgattctggttcttaggca |
13874253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 37010307 - 37010448
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37010307 |
atggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtagatccaattaaaaatattgtttgggtatgg |
37010406 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37010407 |
ttcttgggcaaattgcaagcagtattttgatcaaacccgtgc |
37010448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 37285136 - 37284995
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37285136 |
atggtacatttaaaatattagaaacaatattatatttcaaggtggaatggataatgtggaaaaattggtggatccaattaaaaatattgcttgggtatga |
37285037 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
|| || | |||||| ||| || |||||||||||||||||||| |
|
|
| T |
37285036 |
ttattcgacaaattacaaacaatattttgatcaaacccgtgc |
37284995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 43567673 - 43567814
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
43567673 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaatgggtggatcaaattaaaaatattgtttgggtacgg |
43567772 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
43567773 |
ttcttgggtaaattgcaagcagtattttaatcaaacccgtgc |
43567814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 29458347 - 29458488
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||| || |
|
|
| T |
29458347 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaatggatggatcaaattaaaaatattgtttaggtacgg |
29458446 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29458447 |
ttcttgggcaaattgaaagcagtattttgatcaaacccgtgc |
29458488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 7571107 - 7570994
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7571107 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggtatgg |
7571008 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
7571007 |
ttcatgggcaaatt |
7570994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 16665702 - 16665589
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16665702 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggtatgg |
16665603 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
16665602 |
ttcatgggcaaatt |
16665589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 30736788 - 30736712
Alignment:
| Q |
172 |
tttaatatagttaaagataaaaatactataactttatggtgttacgagaaccacgaggtaactttgtctaatctatcta |
250 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30736788 |
tttaatatagtta--gataaaaatactataactttatggtgttacgagaaccaccaggtaactttgtctaatctatcta |
30736712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 28846064 - 28846177
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28846064 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
28846163 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
28846164 |
ttcttgggcaaatt |
28846177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 4141204 - 4141341
Alignment:
| Q |
20 |
tgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatggttct |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4141204 |
tgcatttaaaatattggaaacaatattatattttaaggtaggatggataatgtgggaaaactggtggatcaaattaaaaatattgcttgggtatggttct |
4141303 |
T |
|
| Q |
120 |
taggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
4141304 |
tgagcaaattgcaagcaatattttaatcaaacccgtgc |
4141341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 10189282 - 10189419
Alignment:
| Q |
20 |
tgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatggttct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
10189282 |
tgcatttaaaatattagaaacaatattatattttaaggtatgatggataatgtgggaaaactggtggatcaaattaaaaatattgcttgggtatggttct |
10189381 |
T |
|
| Q |
120 |
taggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
| |||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
10189382 |
tgagcaaattgcaagcaatattttaatcaaactcgtgc |
10189419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 12278596 - 12278723
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| || ||||| | |
|
|
| T |
12278596 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtggga--------------aaatgggtggatcaaattaaaaatattgcttcggtatcg |
12278681 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12278682 |
ttcttgggcaaattgcaagcagtatttggatcaaacccgtgc |
12278723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 916155 - 916109
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtggga |
62 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
916155 |
atggtgcatttaaaatattagaaaaaatattatatttcaaggtggga |
916109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 916101 - 916027
Alignment:
| Q |
84 |
tggatccaattaaaaatattgtttgggtat--ggttcttaggcaaattgcaagcagtattttgatcaaacccgtg |
156 |
Q |
| |
|
|||||| |||||||||||||| | | |||| | ||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
916101 |
tggatcaaattaaaaatattgctggagtatatgattcttgggcaaattacaagtagtattttgatcaaacccgtg |
916027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1295 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold1295
Description:
Target: scaffold1295; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 1312 - 1174
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1312 |
atggtgcatttgaaatattcgaaacaatattatatttcaaggttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttgggtatgg |
1213 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccg |
154 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
1212 |
ttcttgggaaaattgcaagcagtattttgatcaaacccg |
1174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 14664 - 14805
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
14664 |
atggtgcatttgaaatattcgaaacaatattatatttcaaggttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttggatatgg |
14763 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
14764 |
ttcttggaaaaattgcaagcagtattttgatcaaacccgtgc |
14805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 13430469 - 13430356
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13430469 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggtatgg |
13430370 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
13430369 |
ttcatgggcaaatt |
13430356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 18885489 - 18885622
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
18885489 |
atggtacatttaaaatattagaaacaatattatatttcaatgtggggtggataatgtgggaaaattggtggatcaaattaaaaatattgattgaatatgg |
18885588 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaa |
149 |
Q |
| |
|
||||| || |||||||||||| |||||||||||| |
|
|
| T |
18885589 |
ttcttgggtaaattgcaagcaatattttgatcaa |
18885622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 10792243 - 10792384
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
10792243 |
atggtacatttgaaatattagaaacaatattatatttcaaagttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttggatatgg |
10792342 |
T |
|
| Q |
116 |
ttcttaggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
||| | |||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
10792343 |
ttcatgggcaaattacaagcagcattttgatcaaaccggtgc |
10792384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 13789355 - 13789468
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13789355 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggtatgg |
13789454 |
T |
|
| Q |
116 |
ttcttaggcaaatt |
129 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
13789455 |
ttcatgggcaaatt |
13789468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 52975244 - 52975107
Alignment:
| Q |
20 |
tgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatggttct |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
52975244 |
tgcatttaaaatattaaaaacaatattatattttaaggtgggatggataatgtggaaaaattggtggatcaaattaaaaatattgcttggatatggttct |
52975145 |
T |
|
| Q |
120 |
taggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52975144 |
tgagcaaattgcaagcagtattttaatcaaacccgtgc |
52975107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 25804787 - 25804689
Alignment:
| Q |
16 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25804787 |
atggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatg |
25804689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 39626395 - 39626530
Alignment:
| Q |
22 |
catttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggtatggttctta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||| |
|
|
| T |
39626395 |
catttaaaatattagaaacaatattatatttcaatgtggggtggataatgtgggaaaattggtatatctaattaaaaatattgattgaatatggttcttg |
39626494 |
T |
|
| Q |
122 |
ggcaaattgcaagcagtattttgatcaaacccgtgc |
157 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
39626495 |
ggtaaattgcaagcaatattttgatcaatcccgtgc |
39626530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 22909681 - 22909573
Alignment:
| Q |
22 |
catttaaaatattagaaacaatattatatttcaaggtgggatggataatgtggg-aaaattggtggatccaattaaaaatattgtttgggtatggttctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| | |||||| ||||| | ||||||||||||| |
|
|
| T |
22909681 |
catttaaaatattagaaacaatattatatttcaaggtgggatggttaatgtgggaaaaattgatggataaagttaaaagtattgctcgggtatggttctt |
22909582 |
T |
|
| Q |
121 |
aggcaaatt |
129 |
Q |
| |
|
||||||| |
|
|
| T |
22909581 |
gcgcaaatt |
22909573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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