View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2493_low_1 (Length: 448)

Name: NF2493_low_1
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2493_low_1
NF2493_low_1
[»] chr6 (13 HSPs)
chr6 (136-218)||(14153353-14153435)
chr6 (137-215)||(35060895-35060973)
chr6 (383-439)||(6288108-6288164)
chr6 (371-439)||(24122322-24122390)
chr6 (153-210)||(7203956-7204013)
chr6 (137-218)||(32274184-32274265)
chr6 (135-218)||(17436538-17436621)
chr6 (137-220)||(32275766-32275849)
chr6 (137-215)||(31522535-31522613)
chr6 (134-210)||(806542-806618)
chr6 (138-220)||(4321733-4321815)
chr6 (137-194)||(1826580-1826637)
chr6 (371-439)||(19222487-19222555)
[»] chr7 (17 HSPs)
chr7 (19-136)||(949082-949200)
chr7 (135-210)||(26011958-26012033)
chr7 (371-439)||(13552946-13553014)
chr7 (136-198)||(28138758-28138820)
chr7 (371-436)||(41799805-41799870)
chr7 (140-218)||(5169-5247)
chr7 (137-210)||(26009369-26009442)
chr7 (371-439)||(8525325-8525393)
chr7 (380-439)||(38455249-38455308)
chr7 (137-218)||(1537243-1537324)
chr7 (136-214)||(38790883-38790962)
chr7 (371-436)||(8231748-8231812)
chr7 (137-218)||(19365392-19365473)
chr7 (137-193)||(41957588-41957644)
chr7 (167-213)||(48221700-48221746)
chr7 (135-192)||(42548159-42548216)
chr7 (134-198)||(28139452-28139516)
[»] chr4 (28 HSPs)
chr4 (306-436)||(51718300-51718429)
chr4 (137-215)||(33164505-33164583)
chr4 (371-436)||(634401-634466)
chr4 (140-218)||(24974143-24974221)
chr4 (396-436)||(40451189-40451229)
chr4 (380-439)||(850432-850491)
chr4 (380-439)||(32310153-32310212)
chr4 (371-436)||(40923591-40923656)
chr4 (174-220)||(23283251-23283297)
chr4 (136-218)||(28796619-28796701)
chr4 (137-215)||(36172165-36172243)
chr4 (136-210)||(38677667-38677741)
chr4 (133-210)||(27992309-27992386)
chr4 (373-436)||(21058512-21058575)
chr4 (135-213)||(28798147-28798225)
chr4 (136-210)||(36217869-36217943)
chr4 (140-218)||(40312791-40312869)
chr4 (140-218)||(40322867-40322945)
chr4 (397-439)||(42562978-42563020)
chr4 (167-217)||(46817430-46817480)
chr4 (153-199)||(54208196-54208242)
chr4 (165-214)||(12572820-12572869)
chr4 (137-214)||(34235705-34235782)
chr4 (140-217)||(36501863-36501940)
chr4 (162-210)||(27992140-27992188)
chr4 (135-187)||(37030907-37030959)
chr4 (373-429)||(39463251-39463307)
chr4 (250-286)||(55312182-55312218)
[»] chr1 (20 HSPs)
chr1 (136-218)||(33617643-33617725)
chr1 (136-218)||(28475979-28476061)
chr1 (137-218)||(39650196-39650277)
chr1 (255-436)||(49033510-49033691)
chr1 (167-218)||(33401438-33401489)
chr1 (135-210)||(37260918-37260993)
chr1 (380-439)||(48996857-48996916)
chr1 (373-439)||(28541149-28541215)
chr1 (137-210)||(11821160-11821233)
chr1 (371-436)||(28443137-28443202)
chr1 (137-218)||(28446527-28446608)
chr1 (136-196)||(3792295-3792355)
chr1 (380-439)||(24965803-24965862)
chr1 (380-439)||(44488270-44488329)
chr1 (373-439)||(50907417-50907483)
chr1 (137-198)||(5602944-5603005)
chr1 (136-219)||(28474791-28474874)
chr1 (167-218)||(35563535-35563586)
chr1 (135-214)||(45688306-45688385)
chr1 (137-218)||(45691045-45691126)
[»] chr8 (16 HSPs)
chr8 (306-435)||(9384735-9384863)
chr8 (136-218)||(5967234-5967316)
chr8 (373-439)||(14094761-14094827)
chr8 (380-439)||(10529101-10529160)
chr8 (380-439)||(37230152-37230211)
chr8 (136-210)||(24899071-24899145)
chr8 (137-215)||(33220787-33220865)
chr8 (137-210)||(43640978-43641051)
chr8 (136-200)||(3588339-3588403)
chr8 (371-439)||(22721267-22721335)
chr8 (135-210)||(1349224-1349299)
chr8 (135-198)||(3588562-3588625)
chr8 (396-439)||(20520616-20520659)
chr8 (273-361)||(23558854-23558944)
chr8 (131-216)||(9418581-9418666)
chr8 (137-214)||(31762241-31762318)
[»] chr3 (16 HSPs)
chr3 (371-436)||(39688577-39688642)
chr3 (132-214)||(15040676-15040758)
chr3 (136-218)||(42947374-42947456)
chr3 (136-218)||(53814558-53814640)
chr3 (137-210)||(54528961-54529034)
chr3 (143-218)||(7665739-7665814)
chr3 (137-215)||(6162682-6162760)
chr3 (136-210)||(50663874-50663948)
chr3 (143-217)||(34082845-34082919)
chr3 (137-215)||(53827661-53827739)
chr3 (167-228)||(35062997-35063058)
chr3 (137-210)||(47064864-47064937)
chr3 (380-439)||(34440502-34440561)
chr3 (135-218)||(44833468-44833551)
chr3 (169-209)||(2652942-2652982)
chr3 (136-220)||(4969874-4969958)
[»] chr2 (17 HSPs)
chr2 (137-215)||(8273245-8273323)
chr2 (137-199)||(22788001-22788063)
chr2 (371-436)||(24928896-24928961)
chr2 (371-436)||(25678510-25678575)
chr2 (380-439)||(11815698-11815757)
chr2 (135-217)||(12967268-12967351)
chr2 (380-439)||(31119310-31119369)
chr2 (137-210)||(37893013-37893086)
chr2 (376-436)||(939760-939820)
chr2 (137-218)||(18394967-18395048)
chr2 (134-231)||(31133176-31133273)
chr2 (135-210)||(2675144-2675219)
chr2 (137-192)||(25389873-25389928)
chr2 (140-218)||(11712961-11713039)
chr2 (137-215)||(18387241-18387319)
chr2 (135-196)||(20685004-20685065)
chr2 (165-213)||(42119185-42119233)
[»] chr5 (18 HSPs)
chr5 (380-439)||(2740745-2740804)
chr5 (380-439)||(13271902-13271961)
chr5 (137-220)||(34017614-34017697)
chr5 (136-210)||(11135740-11135814)
chr5 (371-436)||(6702604-6702669)
chr5 (371-439)||(22553137-22553205)
chr5 (135-198)||(6636919-6636982)
chr5 (145-218)||(19401996-19402069)
chr5 (137-209)||(17644606-17644678)
chr5 (136-219)||(28677885-28677968)
chr5 (137-215)||(6702370-6702448)
chr5 (161-210)||(7335557-7335606)
chr5 (137-214)||(34016002-34016079)
chr5 (137-213)||(759160-759236)
chr5 (174-210)||(6158132-6158168)
chr5 (174-218)||(6706032-6706076)
chr5 (167-215)||(40008742-40008790)
chr5 (152-192)||(40266386-40266426)
[»] scaffold0695 (1 HSPs)
scaffold0695 (373-439)||(1622-1688)
[»] scaffold0046 (1 HSPs)
scaffold0046 (380-439)||(75124-75183)
[»] scaffold0010 (1 HSPs)
scaffold0010 (380-439)||(34566-34625)
[»] scaffold1212 (1 HSPs)
scaffold1212 (373-439)||(1592-1658)
[»] scaffold0163 (1 HSPs)
scaffold0163 (135-204)||(35774-35843)
[»] scaffold1063 (1 HSPs)
scaffold1063 (137-220)||(1475-1558)
[»] scaffold0246 (1 HSPs)
scaffold0246 (135-218)||(2850-2933)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 14153353 - 14153435
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  14153353 agaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgcta 14153435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 35060973 - 35060895
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||||||  | |||||  ||||||||||| ||||||| |||||| |||||||||||||||    
T  35060973 gaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 35060895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 6288164 - 6288108
Alignment:
Q  383 caccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    ||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  6288164 caccattcttgcaccattcaaagccaatttctcccacaatatcaagtaagtgatgat 6288108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 24122322 - 24122390
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||| |||||||||| | |||||| ||||||||||| || |||| ||||||||||||||||||||||||    
T  24122322 aaattcgaatttcacgattcttgcgccattcaaagctaatttcgaccacaatatcaagtaagtgatgat 24122390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 7204013 - 7203956
Alignment:
Q  153 ccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||||| ||||||||||    
T  7204013 ccaaatgattttgctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaac 7203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 32274184 - 32274265
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||| |||||||| ||||||||  || | |||||| |||||||||||| | |||| |||||| ||||||||||||||||||    
T  32274184 gaattatgctcattgcccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgcta 32274265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 17436621 - 17436538
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||||| ||||||||  || | || ||| |||||||||||||| ||||  |||||  |||||||||||||||||    
T  17436621 aagaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaacatgcgcta 17436538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 32275849 - 32275766
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacg 220  Q
    ||||| ||||||||  ||||||| ||  | |||||| |||||||||||||  |||| |||||||||| ||||||||||||||||    
T  32275849 gaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaacatgcgctacg 32275766  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 31522613 - 31522535
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||| ||  | |||||| |||||||||||||| |||| |||||| ||| |||||| ||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcg 31522535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 806542 - 806618
Alignment:
Q  134 aaagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||||||| || ||||||   ||||| |||||||||||||||||| | ||||||| |||| | ||||||||    
T  806542 aaagaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaac 806618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 4321815 - 4321733
Alignment:
Q  138 aattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacg 220  Q
    ||||||||||||| || ||||  ||| | ||||| ||||||||||||| |||||| || ||| ||| ||||||||||| ||||    
T  4321815 aattctgctcattacctaaatagtttcgctcattttcaaagtaaatgatcaaaatgcctctacgcaagttaacatgcgttacg 4321733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 1826637 - 1826580
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatac 194  Q
    ||||||||||| ||  ||||||||||||| ||||| | ||||||||||| ||||||||    
T  1826637 gaattctgctctttatccaaatgattttgctcatttttaaagtaaatgatcaaaatac 1826580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 19222487 - 19222555
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||| ||||||||| || |||||| |||||||||||||| |||  ||||||||| || ||||| |||||    
T  19222487 aaattcgaatttcatcattcttgcgccattcaaagccaatttcacccacaatataaaataagtaatgat 19222555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 949082 - 949200
Alignment:
Q  19 gtaatgacatggtactagcattttcatgatcg-agttccataacacatcaaaaaatagtcaaaatattaaagcataccctgagttcatgatttgacactt 117  Q
    ||||||| || ||||||||||||||||||||  ||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |||||||||| |||    
T  949082 gtaatgaaattgtactagcattttcatgatcccagttccataacccagcaaaaaatagttaaaatgttaaaccataccctgagttgatgatttgacgctt 949181  T
Q  118 cacatagtagttgtaaaaa 136  Q
    |||| ||||||||| ||||    
T  949182 cacagagtagttgtcaaaa 949200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 26012033 - 26011958
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||||| || |||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  26012033 aagaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaac 26011958  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 13552946 - 13553014
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||||||||| || |||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  13552946 aaatccgaatttcatcattcttgcgccatttaaagccaatttcgtccacaatatcaagtaagtgatgat 13553014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 28138758 - 28138820
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccct 198  Q
    |||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||    
T  28138758 agaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 41799870 - 41799805
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||| || |||| || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  41799870 aaatccaaaattcatcattcttgcgccattcaaagccaaattcgtccacaatatcaagtaagtgat 41799805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 5247 - 5169
Alignment:
Q  140 ttctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||| ||||||||  || | |||||| |||||||||||||| |||| |||||| ||||||||||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgcta 5169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 26009369 - 26009442
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||| || |||||| ||||||| |||||| ||||||||||||||||||||  |||| ||||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaac 26009442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 8525393 - 8525325
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||| ||||||||| ||||||||| ||||||||||| || ||||||||||| |||| ||||||||||||    
T  8525393 aaattcgaatttcatcaatcttgcgccattcaaagcaaatttcgtccacaacatcatgtaagtgatgat 8525325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 38455249 - 38455308
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  38455249 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 38455308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 1537324 - 1537243
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||| ||||||   | | ||||||||||||||||||||  |||||| |||||  ||||||||||||||||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcgcta 1537243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 38790883 - 38790962
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctc-aaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    |||||||||||||||  ||||||| ||| | ||||| || |||||||| | |||||||||||||| ||||||||||||||    
T  38790883 agaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaacatgc 38790962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 8231812 - 8231748
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||||||||||| || |||||| |||||||||||||| |||  |||| ||||||||||||||||    
T  8231812 aaatccgaatttcatcattcttgcgccattcaaagccaatttctcccac-atatcaagtaagtgat 8231748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 19365473 - 19365392
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||| || |||||  || | |||||| ||||  |||||||| ||||||||||| |||| |||||||||||||    
T  19365473 gaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaatacccctacgcattttaacatgcgcta 19365392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 41957644 - 41957588
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaata 193  Q
    ||||| ||||| || |||||| ||||||| |||||| ||||||||||||||||||||    
T  41957644 gaattttgctctttacccaaacgattttgatcattcccaaagtaaatgaccaaaata 41957588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 48221746 - 48221700
Alignment:
Q  167 tcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatg 213  Q
    |||||| ||||||||||| |||||||||||||| ||||| |||||||    
T  48221746 tcattcccaaagtaaatgtccaaaatacccctacgcatgctaacatg 48221700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 42548159 - 42548216
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaat 192  Q
    |||||||||||||||| |||||||  ||||| |||||| ||||||||| | |||||||    
T  42548159 aagaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 28139516 - 28139452
Alignment:
Q  134 aaagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccct 198  Q
    |||||||||||||  || ||||||||  ||||  ||||| ||||||||||||||||||| |||||    
T  28139516 aaagaattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccct 28139452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 51718300 - 51718429
Alignment:
Q  306 ccagcaacacagaacc-ccattcttccaattttcaagttttgaaaaaacgagattttgannnnnnnaaatccgaatttcaccaatcttgcaccattcaaa 404  Q
    |||||||||||||||| |||||| |||| ||||||| |||| ||||||||| ||||| |       ||||||||||||||||| |||||| |||||||||    
T  51718300 ccagcaacacagaacctccattcctccatttttcaacttttcaaaaaacgaaattttcaccttc--aaatccgaatttcaccattcttgcgccattcaaa 51718397  T
Q  405 gccaaattcgtccacaatatcaagtaagtgat 436  Q
     |  ||||||||||||||||||||||||||||    
T  51718398 ccacaattcgtccacaatatcaagtaagtgat 51718429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 33164583 - 33164505
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||| ||  | |||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 33164505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 634466 - 634401
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    ||||||||| |||| || |||||  |||||||||||||||||||||||||||||||||||||||||    
T  634466 aaatccgaaattcatcattcttgagccattcaaagccaaattcgtccacaatatcaagtaagtgat 634401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 24974221 - 24974143
Alignment:
Q  140 ttctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||  |||||||  |||| |||||| |||||||||||||| |||| |||||| ||||||||||||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgcta 24974143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 40451189 - 40451229
Alignment:
Q  396 ccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40451189 ccattcaaagccaaattcgtccacaatatcaagtaagtgat 40451229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 850491 - 850432
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  850491 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 850432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 32310212 - 32310153
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  32310212 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 32310153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 40923591 - 40923656
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||| || |||| || |||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  40923591 aaatccaaaattcatcattcttgcgccattcaaaaccaaattcgtccacactatcaagtaagtgat 40923656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 23283251 - 23283297
Alignment:
Q  174 caaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacg 220  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||    
T  23283251 caaagtaaatgaccgaaatgcccctatgcaagttaacatgcgctacg 23283297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 28796619 - 28796701
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||| ||||||  || | | |||||||||||||||||| |||||||  || | |||||||||||| ||||||    
T  28796619 agaattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtccaaaatgtccatgtgcatgttaacacgcgcta 28796701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 36172165 - 36172243
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||  ||    |||||| ||||||||| | |||||||||||||||| |||||||||||||    
T  36172165 gaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaacatgcg 36172243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 38677741 - 38677667
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||||| || |||||| |||||||||||||| ||||||||||   ||||||| ||||  ||||||||||    
T  38677741 agaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaac 38677667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 27992386 - 27992309
Alignment:
Q  133 aaaagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||| || ||||| ||||||||  |||| |||||   ||| |||||| |||||||||||||||||||||||||    
T  27992386 aaaagaattatgttcattacccaaatggatttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaac 27992309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 21058575 - 21058512
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||| |||||||| | |||| |||||||||||||| ||| || | |||||||||||||||||    
T  21058575 atccgattttcaccatttttgcgccattcaaagccaatttcttctaaaatatcaagtaagtgat 21058512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 28798225 - 28798147
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatg 213  Q
    |||||||||||||||| ||||||   | | | |||||||||||||||||| ||||||| |||||   ||||||||||||    
T  28798225 aagaattctgctcattacccaaacagtatcgctcattctcaaagtaaatgtccaaaatgcccctgcacatgttaacatg 28798147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 36217869 - 36217943
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||||| || | |||||| ||||  |||||| ||||||||| | ||||||| |||||| ||||||||||    
T  36217869 agaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 36217943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 40312869 - 40312791
Alignment:
Q  140 ttctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||| |||||||||||| | |||||  ||||||||| | | ||||||| | || | ||||||||||||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgcta 40312791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 40322945 - 40322867
Alignment:
Q  140 ttctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||| |||||||||||| | |||||  ||||||||| | | ||||||| | || | ||||||||||||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgcta 40322867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 42563020 - 42562978
Alignment:
Q  397 cattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  42563020 cattcaaagccaatttctcccacaatatcaagtaagtgatgat 42562978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 46817480 - 46817430
Alignment:
Q  167 tcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgct 217  Q
    ||||||| ||||||||||  |||||| |||||| |||||||||||||||||    
T  46817480 tcattcttaaagtaaatgttcaaaatgcccctacgcatgttaacatgcgct 46817430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 54208196 - 54208242
Alignment:
Q  153 ccaaatgattttgttcattctcaaagtaaatgaccaaaataccccta 199  Q
    ||||||| ||||| |||||| |||||||||||| |||||||||||||    
T  54208196 ccaaatggttttgctcattcccaaagtaaatgatcaaaataccccta 54208242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 12572869 - 12572820
Alignment:
Q  165 gttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    |||||||||||||||||||| ||||||| |||||  ||||||||| ||||    
T  12572869 gttcattctcaaagtaaatgtccaaaatgcccctgcgcatgttaatatgc 12572820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 34235782 - 34235705
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    ||||| |||||||| |||||||| ||  | ||||||  ||||||||||||| |||| ||| || ||||||||||||||    
T  34235782 gaattatgctcattacccaaatggttccgctcattcctaaagtaaatgaccgaaatgcccatacgcatgttaacatgc 34235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 36501940 - 36501863
Alignment:
Q  140 ttctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgct 217  Q
    ||||||||||| |||| |||  || | |||||| |||||||||||| | |||| |||||| ||||||| |||||||||    
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgcgct 36501863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 27992140 - 27992188
Alignment:
Q  162 tttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||| |||||| |||||||||||||| |||| |||||| ||||||||||    
T  27992140 tttgctcattcccaaagtaaatgaccgaaatgcccctaagcatgttaac 27992188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 37030907 - 37030959
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgacc 187  Q
    ||||||| || ||||| |||||||||||||| |||||| ||||||||| ||||    
T  37030907 aagaattatggtcattacccaaatgattttgctcattcccaaagtaaaagacc 37030959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 39463251 - 39463307
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagt 429  Q
    |||||| ||||| || |||||| |||||||||||||| ||| |||| ||||||||||    
T  39463251 atccgattttcatcattcttgcgccattcaaagccaatttcttccaaaatatcaagt 39463307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 55312182 - 55312218
Alignment:
Q  250 acgcaacttaagtcatgctgctggacttaagttgcgc 286  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  55312182 acgcaacttaagtcatgcagcttgacttaagttgcgc 55312218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 33617643 - 33617725
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||| |||||||| ||||||||  || | ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  33617643 agaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgcgcta 33617725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 28476061 - 28475979
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||| |||||||| ||  | ||||||||||||||||||| | |||| ||||||  |||||||||||||||||    
T  28476061 agaattctgctcattacccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaacatgcgcta 28475979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 39650196 - 39650277
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||| || ||||| ||| | ||||||  |||||||||| ||||||| |||||| ||||||||||||||||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgcta 39650277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 436
Target Start/End: Complemental strand, 49033691 - 49033510
Alignment:
Q  255 acttaagtcatgctgctggacttaagttgcgcgacggtacttaagtacgta-ccagcaacacagaacc-ccattcttccaattttcaagttttgaaaaaa 352  Q
    |||||||||| || ||  |||||||| ||||| ||| |||||||||  ||  |||||||||||| ||| |||||| |||| ||||||| |||| |||| |    
T  49033691 acttaagtcacgcagcgtgacttaagatgcgctacgttacttaagtcagtttccagcaacacaggacctccattcctccatttttcaacttttcaaaaga 49033592  T
Q  353 cgagattttgannnnnnnaaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    ||| ||||| |       ||||||||||| ||||| | |||| ||||||||| | || ||||||||||||||||||||||||||    
T  49033591 cgaaattttcaccctc--aaatccgaattccaccatttttgcgccattcaaaccaaatttcgtccacaatatcaagtaagtgat 49033510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 33401438 - 33401489
Alignment:
Q  167 tcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  33401438 tcattctcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgcta 33401489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 37260993 - 37260918
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||| ||||| || |||||| | |||||  ||||||||||||||||| ||||||| |||||||||||||||||    
T  37260993 aagaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaac 37260918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 48996857 - 48996916
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  48996857 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 48996916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 28541215 - 28541149
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||| ||||| || |||||| |||||||||||||| ||| |||| ||||||||||||||||||||    
T  28541215 atccgattttcatcattcttgcgccattcaaagccaatttcttccaaaatatcaagtaagtgatgat 28541149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 11821160 - 11821233
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||||||  ||||||| ||| |||||||| ||||||||| | ||||||| | |||||||||||||||    
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaac 11821233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 28443137 - 28443202
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    ||||||||||||||||| | ||||  |||||||| | || ||||||||||||||||||||||||||    
T  28443137 aaatccgaatttcaccattattgcgtcattcaaaccaaatttcgtccacaatatcaagtaagtgat 28443202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 28446608 - 28446527
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||| |||||||| ||||||||  || | |||||| |||||||||||||  |||| |||||| ||||||||||||||||||    
T  28446608 gaattttgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgcta 28446527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 3792295 - 3792355
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaataccc 196  Q
    ||||||||||||||| ||||||||||| |  ||||||||||| |||||| |||||||||||    
T  3792295 agaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaataccc 3792355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 24965862 - 24965803
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| ||| |||||||||| |||  ||||||||||||||||||||||||    
T  24965862 tttcaccattcttgcgccaatcaaagccaatttctcccacaatatcaagtaagtgatgat 24965803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 44488270 - 44488329
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| ||   ||||||||||||||||||||||||    
T  44488270 tttcaccattcttgcgccattcaaagccaatttttcccacaatatcaagtaagtgatgat 44488329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 50907417 - 50907483
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||| ||||| || |||||| |||||||||||||| ||| |||| ||||||||||||| ||||||    
T  50907417 atccgattttcatcattcttgcgccattcaaagccaatttcttccaaaatatcaagtaagcgatgat 50907483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 5602944 - 5603005
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccct 198  Q
    ||||||||||| || ||||||||  |||| |||||| ||||||||||||||||||| |||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccct 5603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 28474791 - 28474874
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctac 219  Q
    ||||||||||||||| ||||||||  ||   |||||| |||| ||||||||  |||| |||||| |||||||||||||| ||||    
T  28474791 agaattctgctcattacccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaacatgcactac 28474874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 35563535 - 35563586
Alignment:
Q  167 tcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||| |||||||||||||  |||| |||||| ||||||||||||||||||    
T  35563535 tcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgcta 35563586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 45688306 - 45688385
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    |||||||| |||||||  ||||||| || || |||||| ||||||||| |  |||||| |||||| ||||||||||||||    
T  45688306 aagaattccgctcattatccaaatggttctgctcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgc 45688385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 45691126 - 45691045
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||| |||||||| | |||||| ||| | |||||| ||||||||| | ||||||| ||||||  |||||||||||| ||||    
T  45691126 gaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaacatgagcta 45691045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 435
Target Start/End: Original strand, 9384735 - 9384863
Alignment:
Q  306 ccagcaacacagaacc-ccattcttccaattttcaagttttgaaaaaacgagattttgannnnnnnaaatccgaatttcaccaatcttgcaccattcaaa 404  Q
    ||||||||||| |||| |||||| |||| ||||||| |||| ||||||||| ||||| |       ||||||||||||||||| |||||| |||||||||    
T  9384735 ccagcaacacaaaacctccattcatccatttttcaacttttcaaaaaacgaaattttcaccctc--aaatccgaatttcaccattcttgcgccattcaaa 9384832  T
Q  405 gccaaattcgtccacaatatcaagtaagtga 435  Q
     | || |||||||||||||||||||||||||    
T  9384833 ccaaatttcgtccacaatatcaagtaagtga 9384863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 5967316 - 5967234
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||| ||||||||  || | |||||| |||||||||||| | |||| |||||| ||||||||||||||||||    
T  5967316 agaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgcta 5967234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 14094761 - 14094827
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||| ||||| || |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  14094761 atccgattttcatcattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 14094827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 10529101 - 10529160
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| ||||| |||||||| |||  ||||||||||||||||||||||||    
T  10529101 tttcaccattcttgcgccatttaaagccaatttctcccacaatatcaagtaagtgatgat 10529160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 37230211 - 37230152
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| ||||||  ||||||||||||| |||  ||||||||||||||||||||||||    
T  37230211 tttcaccattcttgcgtcattcaaagccaatttctcccacaatatcaagtaagtgatgat 37230152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 24899145 - 24899071
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||| ||| || ||||||   |||||||||||| || |||||||||||||||||| |||| ||||||||||    
T  24899145 agaattctactctttacccaaacacttttgttcattcccagagtaaatgaccaaaatactcctacgcatgttaac 24899071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 33220865 - 33220787
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||| |||   |||||| ||||||||| |  |||||| |||||| |||||||||||||||    
T  33220865 gaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgcg 33220787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 43641051 - 43640978
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||||||| |||||||| ||| | |||||  |||||||||||| |||| | |||||| ||||||||||    
T  43641051 gaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaac 43640978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 3588339 - 3588403
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctat 200  Q
    |||||||||||| ||  |||| ||  |||| ||||||||||||||||||||||||||| ||||||    
T  3588339 agaattctgctctttatccaattggatttgatcattctcaaagtaaatgaccaaaataaccctat 3588403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 22721267 - 22721335
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| ||||  || ||||||  ||||||||||||| |||  ||||||||||||||||||||||||    
T  22721267 aaatccgattttcttcattcttgcgtcattcaaagccaatttctcccacaatatcaagtaagtgatgat 22721335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 1349299 - 1349224
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||||| || |||||| | ||||| |||||| | ||  ||||||||||||||||| || ||||||||||    
T  1349299 aagaattctgctctttacccaaaagtttttgctcattcccgaatgaaatgaccaaaatacccttacgcatgttaac 1349224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 3588625 - 3588562
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccct 198  Q
    ||||||||| ||| || ||||||||| |||| |||||| |||| |||||||||||||| |||||    
T  3588625 aagaattctactctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccct 3588562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 439
Target Start/End: Original strand, 20520616 - 20520659
Alignment:
Q  396 ccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||    
T  20520616 ccattcaaagccaatttcttccaaaatatcaagtaagtgatgat 20520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 23558944 - 23558854
Alignment:
Q  273 gacttaagttgcgcgacggtacttaagt-acgtaccagcaacacagaacc-ccattcttccaattttcaagttttgaaaaaacgagatttt 361  Q
    |||||||||||||| ||| ||||||||| |  | |||||||||||||||| |||||| |||| || |||| |||| ||||||||| |||||    
T  23558944 gacttaagttgcgctacgttacttaagtcagtttccagcaacacagaacctccattcctccatttctcaacttttcaaaaaacgaaatttt 23558854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 9418581 - 9418666
Alignment:
Q  131 taaaaagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgc 216  Q
    ||||| |||||||||||||| |||||||| ||| | |||||| ||||||||| |||||   ||||| || |||  |||||||||||    
T  9418581 taaaatgaattctgctcattacccaaatggtttcgctcattcccaaagtaaaagaccattttacccttacgcaacttaacatgcgc 9418666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 31762241 - 31762318
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    ||||||||||||||   ||||||  || | |||||| |||||||||| | | ||||| ||||||||||||||||||||    
T  31762241 gaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaacatgc 31762318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 39688642 - 39688577
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    ||||||||||||||||| |||||| ||||||||| | || ||||||||||||||||||||||||||    
T  39688642 aaatccgaatttcaccattcttgcgccattcaaaccaaatttcgtccacaatatcaagtaagtgat 39688577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 15040676 - 15040758
Alignment:
Q  132 aaaaagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    ||||||||||||||||||| ||||||||  || | |||||| |||||||||||||  |||| |||||| ||||||||||||||    
T  15040676 aaaaagaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgc 15040758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 42947374 - 42947456
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||| || |||||||||   |||||||||||||||| | ||||||| | |||| ||||||||||||||||||    
T  42947374 agaattctgctcattacctaaatgatttcactcattctcaaagtaaaagtccaaaatgctcctacgcatgttaacatgcgcta 42947456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 53814640 - 53814558
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||||||| ||||||||  || | |||||| |||||||||||| |||||| |||||| ||||||||| ||||||||    
T  53814640 agaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgcgcta 53814558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 54529034 - 54528961
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||| || || ||||||||||| |||||||||| ||||||| ||||||||||||||  |||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaac 54528961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 7665739 - 7665814
Alignment:
Q  143 tgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||| ||||||||  || | |||||| |||||||||||||| |||| ||| |||||||||||||||||||||    
T  7665739 tgctcatttcccaaatggattcgctcattcgcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgcta 7665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 6162760 - 6162682
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||| ||  | |||||| ||||||||| | ||||||| |||||| |||||||||||||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 6162682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 50663874 - 50663948
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||||| |  |||||||||||| | |||||| |||||||||| |||||||| |||||| ||||||||||    
T  50663874 agaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaac 50663948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 34082845 - 34082919
Alignment:
Q  143 tgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgct 217  Q
    |||||||| ||||||||| || | |||||  |||||||||||| |||||| | |||| |||||||||||||||||    
T  34082845 tgctcattgcccaaatgaattcgctcatttccaaagtaaatgatcaaaatgctcctacgcatgttaacatgcgct 34082919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 53827739 - 53827661
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| || ||||  | | | |||||| ||||||||||| ||||||| |||||| |||||||||||||||    
T  53827739 gaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 53827661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 35062997 - 35063058
Alignment:
Q  167 tcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacgcaacttaa 228  Q
    ||||||| ||||||||||||| |||||  |||||||| ||||||||||| |||| |||||||    
T  35062997 tcattcttaaagtaaatgaccgaaatattcctatgcaagttaacatgcgatacgtaacttaa 35063058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 47064864 - 47064937
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||| |||||||| ||||||||||| || |||||| ||||||||| | ||||||| | |||| ||||||||||    
T  47064864 gaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaac 47064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 34440561 - 34440502
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||||  |  | ||||||||||||||||||||||    
T  34440561 tttcaccattcttgcgccattcaaagccaaaaactcctacaatatcaagtaagtgatgat 34440502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 44833468 - 44833551
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||||| |||||||| ||  ||| |||  ||||||||| | ||||||| |||||| |||| |||||||| ||||    
T  44833468 aagaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaacatgtgcta 44833551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 2652982 - 2652942
Alignment:
Q  169 attctcaaagtaaatgaccaaaatacccctatgcatgttaa 209  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  2652982 attcccaaagtaaatgatcaaaatacccctacgcatgttaa 2652942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 4969874 - 4969958
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacg 220  Q
    ||||||||||||||| |||||||| ||  | |||||| ||||||||| | | |||||||||||| |   |||||| |||||||||    
T  4969874 agaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacgtgagttaacttgcgctacg 4969958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8273245 - 8273323
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| ||||||||  || | |||||| |||||||||||||| |||| |||||| |||||||||||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcg 8273323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 22788063 - 22788001
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaataccccta 199  Q
    ||||||||||| || ||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaataccccta 22788001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 24928896 - 24928961
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||| || |||| || ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  24928896 aaatccaaaattcatcattcttgcgtcattcaaagccaaattcgtccacaatatcaagtaagtgat 24928961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 25678510 - 25678575
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||| || |||| || |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  25678510 aaatccaaaattcatcattcttgcgccattcaaaaccaaattcgtccacaatatcaagtaagtgat 25678575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 11815698 - 11815757
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  11815698 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 11815757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 12967268 - 12967351
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaat-gaccaaaatacccctatgcatgttaacatgcgct 217  Q
    |||||||||||||||| || ||||| ||  | ||||||||||||||||  | |||||||||||||| |||||||||||||||||    
T  12967268 aagaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaacatgcgct 12967351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 31119369 - 31119310
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| ||||||||||||||||||||| |||   |||||||||||||||||||||||    
T  31119369 tttcaccattcttgcaccattcaaagccaatttctctcacaatatcaagtaagtgatgat 31119310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 37893086 - 37893013
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||| ||| |||||||| ||| | |||||| ||||||||| | ||||||| |||||||||||||||||    
T  37893086 gaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaac 37893013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 939760 - 939820
Alignment:
Q  376 cgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    |||||||||||| |||||| ||||||||| | || ||| ||||||||||||||||||||||    
T  939760 cgaatttcaccattcttgcgccattcaaaccaaatttcatccacaatatcaagtaagtgat 939820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 18395048 - 18394967
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||| ||||||  || | | |||||| |||||||| || ||||||| || || |||||||||||||||||||    
T  18395048 gaattctgctcattacccaaacaatatcgctcattcccaaagtaattgtccaaaatgcctctgtgcatgttaacatgcgcta 18394967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 31133176 - 31133273
Alignment:
Q  134 aaagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacgcaacttaactc 231  Q
    |||||||||||||| || ||||||| |||| | ||||| | |||||||||| |  |||| ||||||  || ||||||||||||||||  |||||||||    
T  31133176 aaagaattctgctctttacccaaatcatttcgctcatttttaaagtaaatgtcataaatgcccctacacaagttaacatgcgctacgtgacttaactc 31133273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 2675144 - 2675219
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||||||||||| ||   |||||  |||||||| |||||||||||||||| ||||||| |||||  |||||||||    
T  2675144 aagaattctgctctttattcaaatagttttgttcgttctcaaagtaaatgatcaaaatagccctacccatgttaac 2675219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 25389928 - 25389873
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaat 192  Q
    ||||||||||| || | ||||||  |||| ||||||||||||||||||||||||||    
T  25389928 gaattctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaat 25389873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 11712961 - 11713039
Alignment:
Q  140 ttctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    ||||||||||| || | ||| ||| | |||||| ||||||||| | ||||||| |||||| | ||||||||||||||||    
T  11712961 ttctgctcattacctagatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgcta 11713039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 18387241 - 18387319
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| | |||||| || || |||||| ||||||||||  | ||||| ||| || |||||||||||||||    
T  18387241 gaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaacatgcg 18387319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 20685004 - 20685065
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaataccc 196  Q
    |||||||||||||||| |||||||| ||  | |||||||||||||||| | | |||||||||    
T  20685004 aagaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaataccc 20685065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 42119185 - 42119233
Alignment:
Q  165 gttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatg 213  Q
    ||||| || ||||||||||| ||||||| |||||| |||||||||||||    
T  42119185 gttcaatcccaaagtaaatgtccaaaatgcccctacgcatgttaacatg 42119233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 2740745 - 2740804
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| ||||| ||||||||||||||| |||  ||||||||||||||||||||||||    
T  2740745 tttcaccattcttgtaccattcaaagccaatttctcccacaatatcaagtaagtgatgat 2740804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 13271902 - 13271961
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  13271902 tttcaccattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 13271961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 34017697 - 34017614
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacg 220  Q
    |||||||||||||| | |||||| ||  | ||||| ||||||||||||||| ||||||||||| ||| || |||||||||||||    
T  34017697 gaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgcaagtaaacatgcgctacg 34017614  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 11135740 - 11135814
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||| ||||| || |||||||||||| | |||||  |||| ||||||||||||||||||||| ||||||||||    
T  11135740 agaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaac 11135814  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 6702604 - 6702669
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgat 436  Q
    ||||||||||||||| | |||||  ||||||||| | || ||||||||||||||||||||||||||    
T  6702604 aaatccgaatttcactattcttgtgccattcaaaccaaatttcgtccacaatatcaagtaagtgat 6702669  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 22553205 - 22553137
Alignment:
Q  371 aaatccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    ||||| |||||||| || |||||  |||||||||||||| |||  ||||||||||||||||||||||||    
T  22553205 aaatctgaatttcatcattcttgtgccattcaaagccaatttctaccacaatatcaagtaagtgatgat 22553137  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 6636982 - 6636919
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccct 198  Q
    ||||||||||||||||  |||||||| | ||||||||| |||| ||||||||||||||| ||||    
T  6636982 aagaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccct 6636919  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 19402069 - 19401996
Alignment:
Q  145 ctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||| |||||||| |||   |||||||||||||||| | ||||||| ||| || ||||||||||||||||||    
T  19402069 ctcattacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaacatgcgcta 19401996  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 17644678 - 17644606
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaa 209  Q
    ||||| |||||||| || |||||  || | |||||| ||||||||||| |||||||||||||| |||||||||    
T  17644678 gaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaa 17644606  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 28677885 - 28677968
Alignment:
Q  136 agaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctac 219  Q
    |||||||||||||||  |||||||   | | ||||||  ||||||||||||| ||||||||||| | | |||||||||||||||    
T  28677885 agaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaacatgcgctac 28677968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 6702370 - 6702448
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||| |||||||  ||| | |||||||||||||||| | | ||||| ||| || |||||||||| ||||    
T  6702370 gaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaacttgcg 6702448  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 7335557 - 7335606
Alignment:
Q  161 ttttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    ||||| ||||||  ||| |||||||||||||||||||||| |||||||||    
T  7335557 ttttgctcattcctaaaataaatgaccaaaatacccctatacatgttaac 7335606  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 34016002 - 34016079
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgc 214  Q
    |||||||||||||| || |||||  || | |||||| |||||||||||||  |||| ||||||  |||||||||||||    
T  34016002 gaattctgctcattacctaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaacatgc 34016079  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 759160 - 759236
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatg 213  Q
    |||||||||||||| || |||||  || | |||||| |||||||||||||| |||| | | || |||||||||||||    
T  759160 gaattctgctcattacctaaatggattcgatcattcccaaagtaaatgaccgaaatgctcatacgcatgttaacatg 759236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 6158132 - 6158168
Alignment:
Q  174 caaagtaaatgaccaaaatacccctatgcatgttaac 210  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  6158132 caaagtaaatgaccgaaatacccctacgcatgttaac 6158168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 6706076 - 6706032
Alignment:
Q  174 caaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||  |||| |||||| ||||||||||||||||||    
T  6706076 caaagtaaatgactgaaatgcccctacgcatgttaacatgcgcta 6706032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 40008742 - 40008790
Alignment:
Q  167 tcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcg 215  Q
    |||||||||||||||||| | ||||| |||||  |||||||||||||||    
T  40008742 tcattctcaaagtaaatgtctaaaatgcccctgcgcatgttaacatgcg 40008790  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 40266386 - 40266426
Alignment:
Q  152 cccaaatgattttgttcattctcaaagtaaatgaccaaaat 192  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  40266386 cccaaatggatttgttcattcccaaagtaaatgaccaaaat 40266426  T

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Target: scaffold0695 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 1688 - 1622
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||| ||||| || |||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  1688 atccgattttcatcattcttgcgccattcaaagccaatttctcccacaatatcaagtaagtgatgat 1622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 75183 - 75124
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| ||| |||||||||| |||  ||||||||||||||||||||||||    
T  75183 tttcaccattcttgcgccaatcaaagccaatttctcccacaatatcaagtaagtgatgat 75124  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 34625 - 34566
Alignment:
Q  380 tttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||||| |||||| |||||| ||||||| |||  ||||||||||||||||||||||||    
T  34625 tttcaccattcttgcgccattccaagccaatttctcccacaatatcaagtaagtgatgat 34566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 1658 - 1592
Alignment:
Q  373 atccgaatttcaccaatcttgcaccattcaaagccaaattcgtccacaatatcaagtaagtgatgat 439  Q
    |||||| ||||| || |||||| |||||||||| ||| ||| |||| ||||||||||||||||||||    
T  1658 atccgattttcatcattcttgcgccattcaaagtcaatttcttccaaaatatcaagtaagtgatgat 1592  T

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Target: scaffold0163 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 35774 - 35843
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcat 204  Q
    ||||||||||||| ||  |||||  |||||| |||||||||||||||||| ||||||| |||||| ||||    
T  35774 aagaattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaatgcccctacgcat 35843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 1475 - 1558
Alignment:
Q  137 gaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgctacg 220  Q
    |||||||||||||| |||||||| ||  | ||||| | |||||||| | ||||||| |||||  ||||||||||||||| ||||    
T  1475 gaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaacatgcgttacg 1558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 2933 - 2850
Alignment:
Q  135 aagaattctgctcattccccaaatgattttgttcattctcaaagtaaatgaccaaaatacccctatgcatgttaacatgcgcta 218  Q
    |||||||||||||||| |||||||| ||| | ||||||||||| |||| ||||    ||||| ||||||  |||||||||||||    
T  2933 aagaattctgctcattacccaaatggtttcgctcattctcaaaataaaagacctttttacccttatgcaacttaacatgcgcta 2850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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