View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2493_low_14 (Length: 243)
Name: NF2493_low_14
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2493_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 49282071 - 49282285
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49282071 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttg |
49282170 |
T |
|
| Q |
111 |
catgtacctttggctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49282171 |
catgtacctttggctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcag |
49282270 |
T |
|
| Q |
211 |
actctagagtgtgct |
225 |
Q |
| |
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||||||||||||||| |
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| T |
49282271 |
actctagagtgtgct |
49282285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 13786860 - 13786728
Alignment:
| Q |
94 |
atccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttc |
192 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13786860 |
atccctacaatcttttgcattgtacctttggctaactgaaactagaaaatcacccttcccatttataagatttgtttgcctagggtcatttagcatgttc |
13786761 |
T |
|
| Q |
193 |
tctggtttcttaaggcatactctagagtgtgct |
225 |
Q |
| |
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||||||||||||||| | |||||| |||||||| |
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| T |
13786760 |
tctggtttcttaaggtagactctacagtgtgct |
13786728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 13786564 - 13786474
Alignment:
| Q |
135 |
tagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||| |
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| T |
13786564 |
tagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctgatttcttaaggtagactctacagtgtgct |
13786474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 13935775 - 13935560
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttg |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||| |
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| T |
13935775 |
tagataatacttcataactctgcattctctacttctctaatggcatgggcatgttcgtcaaggataacaaagttggttacgacatcactataatcttttg |
13935676 |
T |
|
| Q |
111 |
cat-gtacctttggctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggca |
209 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13935675 |
cattgtacctttggctagctgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggca |
13935576 |
T |
|
| Q |
210 |
tactctagagtgtgct |
225 |
Q |
| |
|
||||||||||||||| |
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| T |
13935575 |
gactctagagtgtgct |
13935560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 13307093 - 13306926
Alignment:
| Q |
59 |
gcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattta |
157 |
Q |
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|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13307093 |
gcatgttcgtcaaggataacaaagttggttacagcatccctacaatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattta |
13306994 |
T |
|
| Q |
158 |
taagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgct |
225 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
13306993 |
taagatttttttgcctagggtcatttagcatgttctctggtttcttaaggcagactctacagtgtgct |
13306926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 14596783 - 14596941
Alignment:
| Q |
59 |
gcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattta |
157 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14596783 |
gcatgttcgtcaaggataacaaagttggttacggcatccctacagtcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattta |
14596882 |
T |
|
| Q |
158 |
taagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactcta |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
14596883 |
taagatttgtttgcctaggtacatttagcatgttctctggtttcttaaggcagactcta |
14596941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 14592184 - 14592235
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcat |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14592184 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcat |
14592235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 13309385 - 13309334
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatggcatgggcat |
62 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13309385 |
tagataataattcataactcttcattctctacttctctaatggcatgggcat |
13309334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 21280536 - 21280583
Alignment:
| Q |
11 |
tagataatacttcataactcttcattctctacttctctaatggcatgg |
58 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||||| |
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|
| T |
21280536 |
tagataatacttcataattcttcattctctacatctctaatagcatgg |
21280583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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