View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2493_low_2 (Length: 402)
Name: NF2493_low_2
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2493_low_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 41387865 - 41388043
Alignment:
| Q |
6 |
accggttagtcatttcccgatttaagaaagctaatgtctcgcatctagtctagtttacattctatgttattttatactggtctgtaaaaattaagcatgc |
105 |
Q |
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| T |
41387865 |
accggttagtcatttcccgatttaagaaagctaatgtctcgcatctagtctagtttacattctatgttattttatactggtctgtaaaaattaagcatgc |
41387964 |
T |
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| Q |
106 |
attggaaggttcagtttgctagtgggatatatggagcagatattgaatgtgagttaagaagtctagttaagttcacaggg |
185 |
Q |
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| T |
41387965 |
attgcaaggttcagtttgctagt-ggatatatggagcagatattgaatgtgagttaagaagtctagttaagttcacaggg |
41388043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 215 - 388
Target Start/End: Original strand, 41388082 - 41388255
Alignment:
| Q |
215 |
ttggttcaatatctatggctattttatgattaaattctgattgaaaactttatattaatatgtggaggtattgttctggactctggagatggtgtcagcc |
314 |
Q |
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| T |
41388082 |
ttggttcaatatctatggctattttatgattaaattctgattgaaaactttatattaatatgtgcaggtattgttctggactctggagatggtgtcagcc |
41388181 |
T |
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| Q |
315 |
ccactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctc |
388 |
Q |
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| T |
41388182 |
acactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctc |
41388255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 387
Target Start/End: Original strand, 8689568 - 8689675
Alignment:
| Q |
280 |
aggtattgttctggactctggagatggtgtcagccccactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
379 |
Q |
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| T |
8689568 |
aggtattgtgttggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggt |
8689667 |
T |
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| Q |
380 |
cgtgacct |
387 |
Q |
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| T |
8689668 |
cgtgacct |
8689675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 37050806 - 37050722
Alignment:
| Q |
280 |
aggtattgttctggactctggagatggtgtcagccccactgtaccaatctacgaaggatatgcccttccacatgctatccttcgt |
364 |
Q |
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| T |
37050806 |
aggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgt |
37050722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 68183 - 68263
Alignment:
| Q |
280 |
aggtattgttctggactctggagatggtgtcagccccactgtaccaatctacgaaggatatgcccttccacatgctatcct |
360 |
Q |
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| T |
68183 |
aggtattgttcttgattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcct |
68263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 59625 - 59518
Alignment:
| Q |
280 |
aggtattgttctggactctggagatggtgtcagccccactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
379 |
Q |
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| T |
59625 |
aggtattgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggt |
59526 |
T |
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| Q |
380 |
cgtgacct |
387 |
Q |
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| T |
59525 |
cgtgacct |
59518 |
T |
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