View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2493_low_4 (Length: 332)

Name: NF2493_low_4
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2493_low_4
NF2493_low_4
[»] chr5 (13 HSPs)
chr5 (32-254)||(39879760-39879982)
chr5 (32-254)||(39726364-39726586)
chr5 (32-254)||(38987651-38987867)
chr5 (26-253)||(40418230-40418451)
chr5 (34-253)||(39168793-39169012)
chr5 (116-253)||(3299480-3299620)
chr5 (116-253)||(3392373-3392513)
chr5 (109-250)||(39399809-39399950)
chr5 (109-253)||(1163680-1163824)
chr5 (109-253)||(1849912-1850059)
chr5 (19-73)||(3299639-3299693)
chr5 (19-73)||(3392532-3392586)
chr5 (122-224)||(40102213-40102315)
[»] chr4 (2 HSPs)
chr4 (26-253)||(25912205-25912429)
chr4 (122-188)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 39879982 - 39879760
Alignment:
Q  32 ggcataactaatcttggtgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataacca 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879982 ggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataacca 39879883  T
Q  132 agagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879882 agagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcat 39879783  T
Q  232 cagctaaacgatattttttggcg 254  Q
    |||||||||||||||||||||||    
T  39879782 cagctaaacgatattttttggcg 39879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 39726586 - 39726364
Alignment:
Q  32 ggcataactaatcttggtgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataacca 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726586 ggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataacca 39726487  T
Q  132 agagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcat 231  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726486 agagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcat 39726387  T
Q  232 cagctaaacgatattttttggcg 254  Q
    |||||||||||||||||||||||    
T  39726386 cagctaaacgatattttttggcg 39726364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 38987867 - 38987651
Alignment:
Q  32 ggcataactaatcttggtgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataacca 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  38987867 ggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcct------ccagacaggtcataacca 38987774  T
Q  132 agagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcat 231  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987773 agagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcat 38987674  T
Q  232 cagctaaacgatattttttggcg 254  Q
    |||||||||||||||||||||||    
T  38987673 cagctaaacgatattttttggcg 38987651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 40418451 - 40418230
Alignment:
Q  26 ctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtca 125  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||      ||||||||||||    
T  40418451 ctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggttgatattgatgttggtgtcagctcctccttctcct------ccagacaggtca 40418358  T
Q  126 taaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaacca 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40418357 taaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaacca 40418258  T
Q  226 cagcatcagctaaacgatattttttggc 253  Q
    ||||||||||||||| ||||||||||||    
T  40418257 cagcatcagctaaacaatattttttggc 40418230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 253
Target Start/End: Complemental strand, 39169012 - 39168793
Alignment:
Q  34 cataactaatcttggtgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaag 133  Q
    |||||||| ||||||| |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||   | |||||||| ||||||||||||    
T  39169012 cataactactcttggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaag 39168913  T
Q  134 agcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatca 233  Q
    ||||| |||||||| |||||||||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||    
T  39168912 agcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatca 39168813  T
Q  234 gctaaacgatattttttggc 253  Q
    ||||| ||||||||||||||    
T  39168812 gctaaccgatattttttggc 39168793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 3299620 - 3299480
Alignment:
Q  116 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
Q  213 acacgagcaaccacagcatcagctaaacgatattttttggc 253  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3299520 acacgagcaaccatggcatcagctaaacgatattttttggc 3299480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 3392513 - 3392373
Alignment:
Q  116 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
Q  213 acacgagcaaccacagcatcagctaaacgatattttttggc 253  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3392413 acacgagcaaccatggcatcagctaaacgatattttttggc 3392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 39399950 - 39399809
Alignment:
Q  109 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatc 208  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||     
T  39399950 ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaatt 39399851  T
Q  209 tttcacacgagcaaccacagcatcagctaaacgatatttttt 250  Q
    || ||||||||||||||| |||||||||||||| ||||||||    
T  39399850 ttccacacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 1163680 - 1163824
Alignment:
Q  109 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 207  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||    
T  1163680 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 1163778  T
Q  208 ctttcacacgagcaaccacagcatcagctaaacgatattttttggc 253  Q
    |||| ||||||||||| |  |||| |||||||||||||||||||||    
T  1163779 ctttgacacgagcaactatggcattagctaaacgatattttttggc 1163824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 109 - 253
Target Start/End: Complemental strand, 1850059 - 1849912
Alignment:
Q  109 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagt 205  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||   | |||||||||| |    
T  1850059 ctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaat 1849960  T
Q  206 atctttcacacgagcaaccacagcatcagctaaacgatattttttggc 253  Q
    |||||||||||||||||| |  |||| |||||||||||||||||||||    
T  1849959 atctttcacacgagcaactatggcattagctaaacgatattttttggc 1849912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 3299693 - 3299639
Alignment:
Q  19 cattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  3299693 cattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtt 3299639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 3392586 - 3392532
Alignment:
Q  19 cattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  3392586 cattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtt 3392532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 40102213 - 40102315
Alignment:
Q  122 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagca 221  Q
    ||||||||||| ||||||||||||   ||| |||| |  ||| ||||||||| |||| | |||  | |||||||| ||||||  ||||||||||||||||    
T  40102213 gtcataaccaaaagcatggtcaccaaatttcaaaagataacccagatgagtcttgatattaaatctcgtgtcattctttccaaaatctttcacacgagca 40102312  T
Q  222 acc 224  Q
    |||    
T  40102313 acc 40102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 25912205 - 25912429
Alignment:
Q  26 ctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtca 125  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||   |||| ||||||||||    
T  25912205 ctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggttgttattggtgttggtgttagctcctccttctcct---cctctagacaggtca 25912301  T
Q  126 taaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaacca 225  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25912302 taaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaacca 25912401  T
Q  226 cagcatcagctaaacgatattttttggc 253  Q
    || |||||||||||||||||||||||||    
T  25912402 catcatcagctaaacgatattttttggc 25912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  122 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtt 188  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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