View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2493_low_6 (Length: 315)
Name: NF2493_low_6
Description: NF2493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2493_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 34056789 - 34056495
Alignment:
| Q |
6 |
attaaatacattcaaaatgtgtgtaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctctttcttttattgagtgtggttaaa |
105 |
Q |
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| T |
34056789 |
attaaatacattcaaaatgagtctaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctctttcttttattgagtgtagttaaa |
34056690 |
T |
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| Q |
106 |
aatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcacctgtt |
205 |
Q |
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| T |
34056689 |
a-tttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatggaatttctagatcataattatatccgatctgagcacctgtt |
34056591 |
T |
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| Q |
206 |
attgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
301 |
Q |
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| T |
34056590 |
attgggttttcttcgcgagggtgagggtgtggcagcacctgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcttaatattat |
34056495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 301
Target Start/End: Original strand, 40242585 - 40242785
Alignment:
| Q |
101 |
ttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcac |
200 |
Q |
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| T |
40242585 |
ttaaaaattagtattcacgtgcaatactttgcttgtgcttgctgaaagtttggcttacattttggaatttctaggtcacaattatatcggatctgagcac |
40242684 |
T |
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| Q |
201 |
ctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtatta |
300 |
Q |
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| T |
40242685 |
ttgcttttgggtcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggtgccgacccaactaatattcgcacccaggcaagtatta |
40242784 |
T |
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| Q |
301 |
t |
301 |
Q |
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| T |
40242785 |
t |
40242785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 47379527 - 47379689
Alignment:
| Q |
139 |
ttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggc |
238 |
Q |
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| T |
47379527 |
ttgctgaaattttggcttacattttggaatttctaggtcacaattatatcggatctgagcacctgcttttgggtcttcttcgagagggtgagggtgtggc |
47379626 |
T |
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| Q |
239 |
agcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
301 |
Q |
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| T |
47379627 |
cgcacgtgttcttgaaaatttgggtgctgatccaactaatattcgcacccaggctagtattat |
47379689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 47815056 - 47815220
Alignment:
| Q |
137 |
gcttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtg |
236 |
Q |
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| T |
47815056 |
gcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactgagaacctgcttttggatcttcttcgagagggtgaaggtgtg |
47815155 |
T |
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| Q |
237 |
gcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
301 |
Q |
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| T |
47815156 |
gcagcacgtgttcttgaaaatttgggcgatgatccaactaatattcgcacccaggctagtattat |
47815220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 45111824 - 45111911
Alignment:
| Q |
214 |
ttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
301 |
Q |
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| T |
45111824 |
ttcttcgagagggtgagggagtagcagcacgtgttcttgaaaacctaggcgctgatcctactaatattcgcacacaggctcgtattat |
45111911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 47379397 - 47379456
Alignment:
| Q |
6 |
attaaatacattcaaaatgtgtgtaaatttatctatgaattgttgttagttcattttttg |
65 |
Q |
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| T |
47379397 |
attaaatacattcaaactgagtttaaaattatctacgagttgttgttagtttattttttg |
47379456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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