View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_high_108 (Length: 237)
Name: NF2495_high_108
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_108 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42198017 - 42198235
Alignment:
| Q |
1 |
tgcaacaggttttatacctattgcaaccaatgctgttatgacggagttatggaattcaaaagacacgctgtgtatcatagaaccaacacaagtgcataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42198017 |
tgcaacaggttttatacctattgcaaccaatgctgttatcacggagttatggaattcaaaagacacgctgtgtatcatagaaccaacacaagtgcataac |
42198116 |
T |
|
| Q |
101 |
ttcatgttatcctcagaacgaattgtctcattatatgccacactaaaagccatacctcttaatttcagacatttatgtctgatgtcttcaagtttccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42198117 |
ttcatgttatcctcagaacgaattgtctcattatatgccacactaaaagccata--tcttaatttcagacacttatgtctgatgtcttcaagtttccaaa |
42198214 |
T |
|
| Q |
201 |
actggttccattcataaactt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42198215 |
actggttccattcataaactt |
42198235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 42206893 - 42207103
Alignment:
| Q |
9 |
gttttatacctattgcaaccaatgctgttatgacggagttatggaattcaaaagacacgctgtgtatcatagaaccaacacaagtgcataacttcatgtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42206893 |
gttttatacctattgcaaccaatgctgttatcacggagttatggaattcaaaagacacgctgtgtatcatagaaccaacacaagtgcataacttcatgtt |
42206992 |
T |
|
| Q |
109 |
atcctcagaacgaattgtctcattatatgccacactaaaagccatacctcttaatttcagacatttatgtctgatgtcttcaagtttccaaaactggttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42206993 |
atcctcagaacgaattgtctcattatatgccacactaaaagccata--tcttaatttcagacacttatgtctgatgtcttcaagtttccaaaactggttc |
42207090 |
T |
|
| Q |
209 |
cattcataaactt |
221 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42207091 |
cattcataaactt |
42207103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 42215761 - 42215971
Alignment:
| Q |
9 |
gttttatacctattgcaaccaatgctgttatgacggagttatggaattcaaaagacacgctgtgtatcatagaaccaacacaagtgcataacttcatgtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42215761 |
gttttatacctattgcaaccaatgctgttatcacggagttatggaattcaaaagacacgctgtgtatcatagaaccaacacaagtgcataacttcatgtt |
42215860 |
T |
|
| Q |
109 |
atcctcagaacgaattgtctcattatatgccacactaaaagccatacctcttaatttcagacatttatgtctgatgtcttcaagtttccaaaactggttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42215861 |
atcctcagaacgaattgtctcattatatgccacactaaaagccata--tcttaatttcagacacttatgtctgatgtcttcaagtttccaaaactggttc |
42215958 |
T |
|
| Q |
209 |
cattcataaactt |
221 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42215959 |
cattcataaactt |
42215971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University