View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_high_14 (Length: 459)

Name: NF2495_high_14
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_high_14
NF2495_high_14
[»] chr2 (7 HSPs)
chr2 (24-440)||(17895526-17895942)
chr2 (173-408)||(17887145-17887371)
chr2 (181-408)||(17846879-17847097)
chr2 (225-408)||(17859778-17859949)
chr2 (321-408)||(17908074-17908161)
chr2 (173-399)||(17819332-17819546)
chr2 (72-143)||(43585945-43586016)
[»] chr6 (2 HSPs)
chr6 (53-143)||(785384-785474)
chr6 (77-137)||(1334714-1334774)
[»] chr5 (2 HSPs)
chr5 (85-144)||(7621169-7621228)
chr5 (106-142)||(9031879-9031915)
[»] chr4 (2 HSPs)
chr4 (53-143)||(37496744-37496834)
chr4 (72-140)||(13307925-13307993)
[»] chr8 (1 HSPs)
chr8 (107-144)||(10497744-10497781)
[»] chr7 (1 HSPs)
chr7 (72-145)||(25956493-25956565)
[»] chr1 (1 HSPs)
chr1 (76-140)||(16925683-16925747)


Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 24 - 440
Target Start/End: Complemental strand, 17895942 - 17895526
Alignment:
Q  24 gataaaattttaagaaaatgagatgattcaatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatca 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895942 gataaaattttgagaaaatgagatgattcaatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatca 17895843  T
Q  124 aaagtgttcgtgcaacagagccttcaagttgtcgagacagaccccattcttgccttggaaacttgtgtcacaaatccacgagcagattgttcatcccagt 223  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  17895842 aaagtgtccatgcaacagagccttcaagttgtcgagacagaccccaagcttgccttggaaacttgtgtcacaaatcgacaagcagattgttcatcccagt 17895743  T
Q  224 gctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgagg 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895742 gctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgagg 17895643  T
Q  324 aagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895642 aagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggt 17895543  T
Q  424 ggaactgacgacgtcca 440  Q
    |||||||||||||||||    
T  17895542 ggaactgacgacgtcca 17895526  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 173 - 408
Target Start/End: Complemental strand, 17887371 - 17887145
Alignment:
Q  173 ttgccttggaaacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatccca 272  Q
    |||||| |||||||||||||||||||| | ||  |||| ||| | |  | | ||||| |||||||||||||| | || ||| |||||| |||||||||||    
T  17887371 ttgcctcggaaacttgtgtcacaaatcgaagaatagatcgtttaacgtactcctttatctgattgctgtaatcatttccaacatcatgaaatctatccca 17887272  T
Q  273 aagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccagga 372  Q
    |||||||| ||||||| || |         | |||||  || ||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  17887271 aagcataattcctccatagtt---------ggaagttggtttaatgaaaggaagaaccttggaaatgagatcatttggtggtatataaccaccactagga 17887181  T
Q  373 gctgcatcaggtgctgctggtagtccccagaaaacg 408  Q
    ||||||| |||||||||||||||||||  |||||||    
T  17887180 gctgcattaggtgctgctggtagtcccatgaaaacg 17887145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 408
Target Start/End: Complemental strand, 17847097 - 17846879
Alignment:
Q  181 gaaacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataa 280  Q
    ||||||||||||||||||| | || ||||| ||| | |  | | ||||| |||||||||||||| | || ||| |||||| |||||||||||||||||||    
T  17847097 gaaacttgtgtcacaaatcgaagaacagatcgtttaacatactcctttatctgattgctgtaatcatttccaacatcatgaaatctatcccaaagcataa 17846998  T
Q  281 atcctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatc 380  Q
     ||||||| || |           |||||  || ||||  |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  17846997 ttcctccatagttcg---------aagttggtttaatgaaaggaagaaccttagaaatgagatcatctggtggtatataaccaccataaggagctgcatc 17846907  T
Q  381 aggtgctgctggtagtccccagaaaacg 408  Q
    |||||||||||||||||||  |||||||    
T  17846906 aggtgctgctggtagtcccatgaaaacg 17846879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 408
Target Start/End: Original strand, 17859778 - 17859949
Alignment:
Q  225 ctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgagga 324  Q
    ||||| |||||||||||||| | || ||| |||||| ||||||||||||||||||| ||||||| || | ||        |||| | || ||||  ||||    
T  17859778 ctttatctgattgctgtaatcatttccaacatcatgaaatctatcccaaagcataactcctccatagtt-tg--------aagtctgtttaatgatagga 17859868  T
Q  325 agaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcaggtgctgctggtagtccccagaaaacg 408  Q
    |||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||| |||||||||||||  |||||||    
T  17859869 agaaccttagaaatgagatcatttggtggtatataaccattacc---agctgcatcaggtgatgctggtagtcccatgaaaacg 17859949  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 17908161 - 17908074
Alignment:
Q  321 aggaagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcaggtgctgctggtagtccccagaaaacg 408  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||| |||||| ||||||||||||  |||||||    
T  17908161 aggaagaaccttagaaatgagatcatctggtggtatataaccaccactatgagatgcattaggtgccgctggtagtcccatgaaaacg 17908074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 173 - 399
Target Start/End: Original strand, 17819332 - 17819546
Alignment:
Q  173 ttgccttggaaacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatccca 272  Q
    |||||| |||||||| ||||||||||| | || ||||| ||| | |  | | ||||| |||||||||||||| | |||||||||||||   |||||||||    
T  17819332 ttgcctcggaaacttttgtcacaaatcgaagaacagatcgtttaacatactcctttatctgattgctgtaatcattttcaatatcatgagctctatccca 17819431  T
Q  273 aagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccagga 372  Q
    ||||| || ||||||| || | ||        |||| | || ||||  |||||||||||||||||||||||||| |||||| ||||||||  |||    |    
T  17819432 aagcacaactcctccatagtt-tg--------aagtctgtttaatgataggaagaaccttagaaatgagatcatctggtgggatataaccttcac---ta 17819519  T
Q  373 gctgcatcaggtgctgctggtagtccc 399  Q
    ||||||||||||| |||||||||||||    
T  17819520 gctgcatcaggtgatgctggtagtccc 17819546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 43586016 - 43585945
Alignment:
Q  72 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 143  Q
    |||| ||||||| |||||||||||||| || |   |||||| |||||||||| |||||||||||||||||||    
T  43586016 gtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagag 43585945  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 785474 - 785384
Alignment:
Q  53 aatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 143  Q
    ||||||||||| || ||| |||| ||||||||||| |||  |||||||| |  ||||||| |||||||||| |||||| ||||||||||||    
T  785474 aatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 1334714 - 1334774
Alignment:
Q  77 ggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgca 137  Q
    ||||||||||||||| ||||||| | |  ||||||| |||||||||| |||||| ||||||    
T  1334714 ggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 7621228 - 7621169
Alignment:
Q  85 acacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagc 144  Q
    ||||||||| | ||||| || |||||||| ||||||||| |||||| |||||||||||||    
T  7621228 acacgatacttatcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagagc 7621169  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 9031915 - 9031879
Alignment:
Q  106 aggacacgccttcaatcaaaagtgttcgtgcaacaga 142  Q
    |||||||||||||||||| |||||| |||||||||||    
T  9031915 aggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 37496744 - 37496834
Alignment:
Q  53 aatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 143  Q
    ||||||||||| || ||| |||| | || || |||||| || ||||||| |   ||||||||||||||||| |||||| ||||||||||||    
T  37496744 aatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 13307925 - 13307993
Alignment:
Q  72 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaaca 140  Q
    |||||||||||| |||||| ||||||| || |  | |||| ||||||||||| ||||||| ||||||||    
T  13307925 gtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 10497781 - 10497744
Alignment:
Q  107 ggacacgccttcaatcaaaagtgttcgtgcaacagagc 144  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  10497781 ggacacgccttcaatcagaggtgttcgtgcaacagagc 10497744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 25956493 - 25956565
Alignment:
Q  72 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagcc 145  Q
    |||| ||||||| ||||||||| ||||||| |   ||||||||||||||||| |||||| ||||||| ||||||    
T  25956493 gtgtcggtgtcggacacgatacatgtcggacacg-ggacacgccttcaatcagaagtgtccgtgcaatagagcc 25956565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 16925683 - 16925747
Alignment:
Q  76 tggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaaca 140  Q
    |||||||| ||||||||||||||||| |  || |||| |||||||| |||||||| | |||||||    
T  16925683 tggtgtcgcacacgatacgtgtcggacaccagaacactccttcaattaaaagtgtccatgcaaca 16925747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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