View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_high_17 (Length: 446)
Name: NF2495_high_17
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 48234258 - 48234678
Alignment:
| Q |
11 |
cacagacaaagctagttcaagatgatattgatagtgctttcctagagacacgttcaatagttgacaagttacgcattgatgttgaaacatttcttcatgc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48234258 |
cacagacaaagctagttcaagatgatattgatagtgctttcctagagacacattcaatagttgacaagttacgcattgatattgaaacatttcttcatgc |
48234357 |
T |
|
| Q |
111 |
aaaacgatttattgacttgaagagatataataactcctcaattaaagtgctcaaggaaattcaccctagccggcatccattggattccttcaagctaaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48234358 |
aaaacgatttattgacttgaagagatataataactcctcaattaaagagctcaaggaaattcaccctagccgacatccattggattccttcaagctaaag |
48234457 |
T |
|
| Q |
211 |
aagacaataaattcacctcataattttgctgaggaagttttaagtttacattggtaccggcattttttaacggaaaaggactgatgagaaaggacttaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48234458 |
aagacaataaattcacctcataattttgctgaggaagttttaagtttacattggtaccggcattttttaacggaaaaggactgatgagaaaggacttaac |
48234557 |
T |
|
| Q |
311 |
aagtgttttgttgaggggaaatcaagtgaaattggaaggtacagcacatgggtatcaactttgtgtgagacaatagaaggtccaccagaaatgggaggca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48234558 |
aagtgttttgttgaggggaaatcaagtgaaattggaaggtacagcacatgggtatcaactttgtgtgagacaatagaaggtccaccagaaatgggaggca |
48234657 |
T |
|
| Q |
411 |
gggcaaagagaattaattcaa |
431 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48234658 |
gggcaaagagaattaattcaa |
48234678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 48232046 - 48232373
Alignment:
| Q |
19 |
aagctagttcaagatgatattgatagtgctttcctagagacacgttcaatagttgacaagttacgcattgatgttgaaacatttcttcatgcaaaacgat |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||| | |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
48232046 |
aagctagttcaagatggtattggcagtgatctcctagagacacattcaatagttgacaagttacatgttgatattgaaacatttcttcatacaaaaagat |
48232145 |
T |
|
| Q |
119 |
ttattgacttgaagagatataataactcctcaattaaagtgctcaaggaaattcaccctagccggcatccattggattccttcaagctaaagaagacaat |
218 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||| ||||||||||||||||| ||| | | ||||||||||||| | |||||| ||||||| |
|
|
| T |
48232146 |
ctattgacttgaagagatataatttcccctccattaaagaagtcaaggaaattcacccttgcctaccttcattggattcctttcaactaaaggagacaat |
48232245 |
T |
|
| Q |
219 |
aaattcacctcataattttgctgaggaagttttaagtttacattggtaccggcattttttaacggaaaaggactgatgagaaaggacttaacaagtgttt |
318 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || |||||||||| || ||| ||| ||||||||||| ||||| ||||||||||||| || |
|
|
| T |
48232246 |
aaattcacctcataattttgccgagg-------aagcttccattggtaccaacaagtttgaacagaaaaggactgcggagaacagacttaacaagtgctt |
48232338 |
T |
|
| Q |
319 |
tgttgaggggaaatcaagtgaaattggaaggtaca |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
48232339 |
tgttgaggggaaatcaagtgaaattggaaggtaca |
48232373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 10561744 - 10561692
Alignment:
| Q |
64 |
tcaatagttgacaagttacgcattgatgttgaaacatttcttcatgcaaaacg |
116 |
Q |
| |
|
||||| |||||||||||| | ||||| | ||||||||||||||||||||||| |
|
|
| T |
10561744 |
tcaattgttgacaagttaggttttgatatagaaacatttcttcatgcaaaacg |
10561692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University