View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_19 (Length: 441)
Name: NF2495_high_19
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 15291844 - 15292279
Alignment:
| Q |
19 |
aaaggaggatgttgaactattatttaatcattttttcattattgcttatctcgtcaatgtattctctaattgcttgataacacttattgataaggtgcca |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15291844 |
aaaggaggatgttgaactattatttaatcactttttcattattgcttatctcgtcaatgtattctctaattgcttgataacacttattgataaggtgcca |
15291943 |
T |
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| Q |
119 |
agttcttagtctctaggtgatt---------------ggattgattgtatttataaattgttggctaaggcttttaataagagtttgggagagcttatgg |
203 |
Q |
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| T |
15291944 |
agttcttagtctctaggtgattttcttcctatatcttggattgattgtatttataaattgttggctaaggtttttaataagagtttgggagagcttatgg |
15292043 |
T |
|
| Q |
204 |
ataatttatttcgctcaaccggtcatggtggatgtggtgttgaccgtgaataagttagcggattaggtaaagaaatatggtaaagacttagtggtataca |
303 |
Q |
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| T |
15292044 |
ataatttatttccctcaaccggtcatggtggatgtggtgttgaccgtgaataagttagtggactaggtaaggaaatatggtaaagacttagtggtataca |
15292143 |
T |
|
| Q |
304 |
aaagaaccattaatttttatttttaataacgttagttttagtaaaacttagaaggtgcaaatactaaaagcctgcgagaaaacgtcaaatttttaggccc |
403 |
Q |
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| T |
15292144 |
aaagaaccattaatttttatttttaataacgttagttttagtaaaacttagaaggtgcaaatactaaaagcctgcgagaaaaagtcaaatttttaggccc |
15292243 |
T |
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| Q |
404 |
aagcctaagtgtccaaaccctaaaataacatgttcc |
439 |
Q |
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| T |
15292244 |
aagcccaagagtccaaaccctaaaataacatgttcc |
15292279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 15289122 - 15289555
Alignment:
| Q |
19 |
aaaggaggatgttgaactattatttaatcatttttt-cattattgcttatctcgtcaatgtattctctaattgcttgataacacttattgataaggtgcc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| |||||| || ||||||||||||||| | |
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| T |
15289122 |
aaaggaggatattgaactattatttaatcatttttttcattaatgcttatcttgtcaatgtattctctaattacttgattactcttattgataaggtgtc |
15289221 |
T |
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| Q |
118 |
aagttcttagtctctaggtgatt---------------ggattgattgtatttataaattgttggctaaggcttttaataagagtttgggagagcttatg |
202 |
Q |
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||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||| | |
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| T |
15289222 |
aagttcttagtctctaggtgatttgcgtcctatatcttggattggttgtattaataaattgttggctaagcttttcggtaagagtttgggagagcttaag |
15289321 |
T |
|
| Q |
203 |
gataatttatttcgctcaaccggtcatggtggatgtggtgttgaccgtgaataagttagcggattaggtaaagaaatatggtaaagacttagtggtatac |
302 |
Q |
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| T |
15289322 |
gataatttatttccctcaactagtcatggtggatgtggtgttgatcg-aaatgatttagtggactatgtaaagaaatatggtactgacttagtggaattt |
15289420 |
T |
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| Q |
303 |
aaaagaaccattaatttttatttttaataacgttagttttagtaaaacttagaaggtgcaaatactaaaagcctgcgagaaaacgtcaa-atttttaggc |
401 |
Q |
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||||||| |||||||||| ||| ||||| |||| ||||| |||| ||||||||||||||||| ||||||| |||||||| |||| ||||||||| |
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| T |
15289421 |
aaaagaaacattaatttt--tttaaaataatgttacttttaataaaccttagaaggtgcaaataggaaaagcccacgagaaaa-ttcaatttttttaggc |
15289517 |
T |
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| Q |
402 |
ccaagcctaagtgtccaaaccctaaaataacatgttcc |
439 |
Q |
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|||| || ||| ||| |||||||||||||| |||||| |
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| T |
15289518 |
ccaaacccaagagtctgaaccctaaaataacttgttcc |
15289555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 15395749 - 15395850
Alignment:
| Q |
269 |
ggtaaagaaatatggtaaagacttagtggtatacaaaagaaccattaatttttatttttaataacgttagttttagtaaaacttagaaggtgcaaatact |
368 |
Q |
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| T |
15395749 |
ggtaaagaaatatgttaa-gacttagtggtctacaaaatcaatattcactttatttttaaataatgttagttttagtaaaacttagaaggtgcaaataat |
15395847 |
T |
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| Q |
369 |
aaa |
371 |
Q |
| |
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||| |
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| T |
15395848 |
aaa |
15395850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 15370935 - 15371058
Alignment:
| Q |
226 |
tcatggtggatgtggtgttgaccgtgaataagttagcggattaggtaaagaaatatggtaaagacttagtggtatacaaaagaaccattaatttttattt |
325 |
Q |
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|||||||| || ||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||| ||||| || | |||| ||||| ||| |
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| T |
15370935 |
tcatggtgaatatggtgttgatagtgaataagttaatggcctaggtaaataaataaggtaaagacttagtggtctacaagaggaacattcattttatttt |
15371034 |
T |
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| Q |
326 |
ttaataacgttagttttagtaaaa |
349 |
Q |
| |
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| T |
15371035 |
taaacaacgatacttttagtaaaa |
15371058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 15387411 - 15387493
Alignment:
| Q |
267 |
taggtaaagaaatatggtaaagacttagtggtatacaaaagaaccattaatttttatttttaataacgttagttttagtaaaa |
349 |
Q |
| |
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|||||||| |||| ||||||||||||||||| |||||||| | |||| ||||| |||| |||| || || ||||||||||| |
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| T |
15387411 |
taggtaaaaaaattaggtaaagacttagtggtctacaaaaggaacattcattttctttttaaatagcgatacttttagtaaaa |
15387493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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