View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_high_23 (Length: 431)

Name: NF2495_high_23
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_high_23
NF2495_high_23
[»] chr6 (1 HSPs)
chr6 (1-330)||(380531-380860)
[»] chr7 (3 HSPs)
chr7 (1-330)||(6232116-6232446)
chr7 (129-282)||(48888137-48888289)
chr7 (133-254)||(19883466-19883586)
[»] chr4 (4 HSPs)
chr4 (113-330)||(55329059-55329275)
chr4 (129-330)||(18847963-18848163)
chr4 (128-261)||(55353539-55353671)
chr4 (129-264)||(42111003-42111137)
[»] chr2 (2 HSPs)
chr2 (164-291)||(38970996-38971123)
chr2 (143-234)||(16080456-16080546)
[»] chr8 (3 HSPs)
chr8 (132-291)||(42202637-42202795)
chr8 (129-264)||(44684446-44684580)
chr8 (143-222)||(25967835-25967913)
[»] chr5 (4 HSPs)
chr5 (129-318)||(3678230-3678417)
chr5 (134-330)||(2756301-2756496)
chr5 (131-330)||(42628995-42629193)
chr5 (129-223)||(3761009-3761102)
[»] chr1 (1 HSPs)
chr1 (346-428)||(42197316-42197398)
[»] chr3 (1 HSPs)
chr3 (129-218)||(51361293-51361381)
[»] scaffold0691 (1 HSPs)
scaffold0691 (129-249)||(1168-1287)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 380531 - 380860
Alignment:
1 cctgcacccaaaccaaaactaaacccctgaaccggcagctataacagaaaaacagcaacaacagaaaaccggcatagcagaaaacaaaagcccaaaaggt 100  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
380531 cctgcacccaaaacaaaactaaacccctgaaccggcaactataacagaaaaatagcaacaacagaaaactggcatagcagaaaacaatagcccaaaaggt 380630  T
101 gcagcagaactacagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccact 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
380631 gcagcagaactacaacaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccact 380730  T
201 cgtaatagaggcatggaggactcctaaatctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatatt 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
380731 cgtaatagaggcatggaggactcctaagtctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaaaatt 380830  T
301 gttaaagatcctatcatttctcgctttcca 330  Q
    |||||||||||||||||||||| |||||||    
380831 gttaaagatcctatcatttctcactttcca 380860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 6232446 - 6232116
Alignment:
1 cctgcacccaaaccaaaactaaacccctgaaccggcagctataacagaaaaacagcaacaa-cagaaaaccggcatagcagaaaacaaaagcccaaaagg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |    
6232446 cctgcacccaaaccaaaactaaacccctgaaccggcagctataccagaaaaaccgcaacaaacagaaaactggcatagcagaaaacaaaagcccaaaaag 6232347  T
100 tgcagcagaactacagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccac 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
6232346 tgcagcagaactaaagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccac 6232247  T
200 tcgtaatagaggcatggaggactcctaaatctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatat 299  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6232246 tcgtaatagaggcatggaggactcctaagtctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatat 6232147  T
300 tgttaaagatcctatcatttctcgctttcca 330  Q
    ||||||||||| |||||||||||||||||||    
6232146 tgttaaagatcatatcatttctcgctttcca 6232116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 48888289 - 48888137
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 228  Q
    ||||||||||||||||||||| |||| ||||||   ||||||| |  ||||||||||||||||  |||||||||||||||||||| ||||||||| | |     
48888289 caaaagtcccggacacctctagaactaccccacca-atctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttag 48888191  T
229 tctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcacc 282  Q
    |||||||||  ||||||||||||| | |||||||||||| || |||| ||||||    
48888190 tctagaattcacccaattccacgagagcaccttaatatcatcaaccatttcacc 48888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 254
Target Start/End: Original strand, 19883466 - 19883586
Alignment:
133 agtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatcta 232  Q
    |||||||||||||||||||||| |||||  | |||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||| | | ||||    
19883466 agtcccggacacctctaaaactaccccaact-atctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtcta 19883564  T
233 gaattagcccaattccacgaaa 254  Q
    ||    ||||||||||||||||    
19883565 gacaccgcccaattccacgaaa 19883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 113 - 330
Target Start/End: Complemental strand, 55329275 - 55329059
Alignment:
113 cagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggc 212  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||  |||||||||||||||||||    
55329275 cagcaacctcaacaggaaaaagtcacggacacctctaaaactgccccacct-atctcaataagcattccttgaggttccaacaccactcgtaatagaggc 55329177  T
213 atggaggactcctaaatctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatattgttaaagatcct 312  Q
    | |||| |||| ||| ||| ||||| |  ||||| ||||||||||||||||| |||||||| | |||||||||||||||  |||  || || || |||||    
55329176 aaggagaactcttaagtcttgaattcgttcaatttcacgaaatcaccttaatttcctccacaatttcaccaaaatccttcaaaaggttattgaaaatcct 55329077  T
313 atcatttctcgctttcca 330  Q
    |||||| |||||||||||    
55329076 atcattcctcgctttcca 55329059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 330
Target Start/End: Complemental strand, 18848163 - 18847963
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 228  Q
    |||||||||||||||||||||||||| |||||  | ||||||||| |||||||||||||||||  |||||||||||||||||||| ||||||||  |||     
18848163 caaaagtcccggacacctctaaaactaccccaact-atctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaag 18848065  T
229 tctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatattgttaaagatcctatcatttctcgctttc 328  Q
    ||||| |   |||||||||||| ||| ||||||||| || || || | |||| ||  ||| ||   || ||| ||||| |||||||||||||| ||||||    
18848064 tctagtaaccgcccaattccaccaaagcaccttaatgtcatcaacaatttcatcacgatctttcacaagattattaaaaatcctatcatttcttgctttc 18847965  T
329 ca 330  Q
    ||    
18847964 ca 18847963  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 55353671 - 55353539
Alignment:
128 acaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaa 227  Q
    |||| |||||| | ||||||| ||||| |||||| | ||| ||| | ||||| ||||||||||| |||||| |||||| ||||||| ||||||||  |||    
55353671 acaatagtccctgccacctctgaaactaccccacct-atcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaa 55353573  T
228 atctagaattagcccaattccacgaaatcacctt 261  Q
     ||| ||||| |||||||||||||| ||||||||    
55353572 gtctggaattcgcccaattccacgagatcacctt 55353539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 264
Target Start/End: Original strand, 42111003 - 42111137
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 228  Q
    |||||||||||||||||||||||||| ||||||  | ||  |  |||||||||||||||||||  ||||||||  || |||||||  |||||||| |||     
42111003 caaaagtcccggacacctctaaaactaccccac-ctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaag 42111101  T
229 tctagaattagcccaattccacgaaatcaccttaat 264  Q
    ||| | | | ||||||||||| || | |||||||||    
42111102 tcttgtaatcgcccaattccaagagagcaccttaat 42111137  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 38971123 - 38970996
Alignment:
164 tatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctagaattagcccaattccacgaaatcaccttaa 263  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||||  |||||||  ||| ||||||||| |||||||||||||||||||||||||    
38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaatcaccttaa 38971024  T
264 tatcctccaccaattcaccaaaatcctt 291  Q
    | |||||||| | |||||||||||||||    
38971023 tttcctccacaatttcaccaaaatcctt 38970996  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 16080546 - 16080456
Alignment:
143 acctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctaga 234  Q
    |||||||||||| |||||  || |||||  || ||||||||||||||||  |||||||| ||| ||||||| ||||||||| | ||||||||    
16080546 acctctaaaactaccccaattt-tctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggactctttaatctaga 16080456  T

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Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 291
Target Start/End: Complemental strand, 42202795 - 42202637
Alignment:
132 aagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatct 231  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||  | |||||||  |||||||||||||||||||| ||||||||| ||| |||    
42202795 aagtcccagacacctctaaaactgccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 42202697  T
232 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatcctt 291  Q
    ||||||  ||||||||||| ||||||||||||| ||||| || | ||||||| |||||||    
42202696 agaattcacccaattccacaaaatcaccttaatttcctcaactatttcaccataatcctt 42202637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 264
Target Start/End: Complemental strand, 44684580 - 44684446
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 228  Q
    |||||||||| ||||||||||||||| |||||| |  ||  |  |||||||||||||||||||  |||||||| ||| ||||||| ||||||||| |||     
44684580 caaaagtcccagacacctctaaaactaccccacctg-tcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaag 44684482  T
229 tctagaattagcccaattccacgaaatcaccttaat 264  Q
    | | | | | ||||||||||| || | |||||||||    
44684481 ttttgtaatcgcccaattccaagagagcaccttaat 44684446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 25967835 - 25967913
Alignment:
143 acctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggact 222  Q
    ||||||||||||||||| || ||||| || || || || |||||||||| || |||||||||| ||||||| ||||||||    
25967835 acctctaaaactgcccc-cgctatcttaacaaacactctttggggttccagctccactcgtaaaagaggcaaggaggact 25967913  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 129 - 318
Target Start/End: Original strand, 3678230 - 3678417
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 228  Q
    ||||||||| ||||||||||||||||||||  |  ||||| |||||||||||  |||||||||  ||| ||| |||||||||||| ||||||||| |||     
3678230 caaaagtccaggacacctctaaaactgcccacc--tatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaag 3678327  T
229 tctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatattgttaaagatcctatcatt 318  Q
    ||||| | |  ||||||||||||||||||||||||| ||||| || | ||||||||||||||| || | ||| || || |||||||||||    
3678328 tctagtaatcacccaattccacgaaatcaccttaatctcctcaacaatttcaccaaaatccttcgataaatttttgaaaatcctatcatt 3678417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 330
Target Start/End: Original strand, 2756301 - 2756496
Alignment:
134 gtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctag 233  Q
    ||||||||| ||||||||||| |||||  | |||||| ||| |||| |||||||||||  |||||||||||||| ||||| ||||| ||| | | |||||    
2756301 gtcccggacgcctctaaaactaccccaact-atctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctag 2756399  T
234 aattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatattgttaaagatcctatcatttctcgctttcca 330  Q
    ||     |||||||||||||| ||||||||| || || || | ||||||| |||| ||   || ||| ||||| |||||||||||||||||||||||    
2756400 aaaccatccaattccacgaaagcaccttaatctcatcaacaatttcaccataatctttcacaagattattaaaaatcctatcatttctcgctttcca 2756496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 330
Target Start/End: Original strand, 42628995 - 42629193
Alignment:
131 aaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatc 230  Q
    |||||||||||| ||||||||||| |||||  | ||||||  |  ||||||||||||||||| |||||||| ||||||||||| ||||||||  | | ||    
42628995 aaagtcccggacgcctctaaaactaccccaact-atctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtc 42629093  T
231 tagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatattgttaaagatcctatcatttctcgctttcca 330  Q
    ||| |   |||||||||||||||| |||| |||| || || || | ||||||||| || ||   || |||  |||| ||||||||||||||| |||||||    
42629094 tagtaaccgcccaattccacgaaagcaccataatttcatcaacaatttcaccaaattctttcacaagattactaaaaatcctatcatttctcactttcca 42629193  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 3761009 - 3761102
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactc 223  Q
    ||||||||||  |||||||||||||| ||||| | ||| ||| ||| |||||||||||||||   || ||||||||||||||||| |||| ||||    
3761009 caaaagtcccaaacacctctaaaactacccca-gctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactc 3761102  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 42197398 - 42197316
Alignment:
346 gtcacgtttagtttatttagacattaatatacatactttatggttattattatggttgaggttttataatggatgatatatat 428  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
42197398 gtcacatttagtttatttagacattaatatacatactttattgttattattatggttgaggttttataatggatggtatatat 42197316  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 51361381 - 51361293
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggag 218  Q
    |||||||||| ||||||||||||||| |||||  | ||||||||| |||||||||||||||||  |||||||| ||||||||||| ||||    
51361381 caaaagtccctgacacctctaaaactaccccaact-atctcaataggcattccttggggttccaacaccactcataatagaggcagggag 51361293  T

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Target: scaffold0691 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 1287 - 1168
Alignment:
129 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 228  Q
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1287 caaaagtcccggacacctctaaaactaccccacctg-tcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaag 1189  T
229 tctagaattagcccaattcca 249  Q
    ||| | | | |||||||||||    
1188 tcttgtaatcgcccaattcca 1168  T

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