View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_25 (Length: 411)
Name: NF2495_high_25
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 33779410 - 33779012
Alignment:
| Q |
1 |
cacaaaattctatatattacgggaccatatgacaagtcataccttcggttcaacagcatcaaagtacaccataggaccaaacaattcatcaaaattacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33779410 |
cacaaaattctatatattacgggaccatatgacaagtcataccttcggttcaacagcatcaaagtacaccataggaccaaacaattcatcaaaattacaa |
33779311 |
T |
|
| Q |
101 |
ttatctacataagctagtatatttcnnnnnnntttaattttctgtatcaagtatgctgttgcataagctataattatctgcataagctgcattgtatcaa |
200 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33779310 |
ttatctacataagctagtatatttcaaaaaactt-aattttctgtatcaagtatgctgctgcataagctataattatctgcataagctgcattgtatcaa |
33779212 |
T |
|
| Q |
201 |
gtatgctgctacaaattaagnnnnnnnnnnnnnncaccttcttctcccaagctacttacattatttaactggttgcttttattgcagggcattcgtagtg |
300 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33779211 |
gtatgctgctacaaattaagttttttagttttttcaccttgttctcccaagctacttacattatttaactggttgcttttattgcagggcattcgtagtg |
33779112 |
T |
|
| Q |
301 |
aatcttggtgacatgcttgagcgttggagcaacggtgttttcaagtaagaaacctgtctcaccttttagttttctgtgcttgattgaggcaggcatattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33779111 |
aatcttggtgacatgcttgagcgttggagcaacggtgttttcaagtaagaaacctgtctcaccttttggttttctgtgcttgattgaggcaggcatattc |
33779012 |
T |
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