View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_28 (Length: 405)
Name: NF2495_high_28
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 49510960 - 49511332
Alignment:
| Q |
17 |
agtatcttcccaacattttcccggcacataccgttctgctccatccaatggaatatacggaacagaaccatctagaaaatgtgcatcttggtaaagagta |
116 |
Q |
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| T |
49510960 |
agtatcttcccaacattttcccggcacataccgttctgctccatccaatggaatatacggaacagaaccatctagaaaatgtgcatcttggtaaagagta |
49511059 |
T |
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| Q |
117 |
atttggcaaccattattttgtttaaagaatgtgcgaggaactccttgatatcctggactctttattccttgtgaccagtttggatcatttttaacatgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49511060 |
atttggcaaccattattttgtttaaagaatgtgcgaggaactccttgatatcctggactctttagtccttgtgaccagtttggatcatttttaacatgtg |
49511159 |
T |
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| Q |
217 |
agaattgtatttgaacatgaattttggaaccgccttgtattggacgatgatctacatctaatatattaacccatgtattcactatgttgccctttatgac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49511160 |
agaattgtatttgaacatgaattttggaaccgccttgtattggatgatgatctacatctaatatattaacccatgtattcactatgttgccctttatgac |
49511259 |
T |
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| Q |
317 |
ttgttcaactggaacataagctcttccaattagagttgctccaatggggttatcttgtttggcagtgaatata |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49511260 |
ttgttcaactggaacataagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatata |
49511332 |
T |
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