View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_4 (Length: 647)
Name: NF2495_high_4
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Original strand, 53703978 - 53704595
Alignment:
| Q |
16 |
gatacaacaataaggcaatcttttgaacagcacatttggaaattggcctaaataagacactgataaacacaggcagctaaacttagtaacttacacaact |
115 |
Q |
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| T |
53703978 |
gatacaacaataaggcaatcttttgaacagcacatttggaaattggcctaaataagacactgataaacacaggcagctaaacttagtaacttacacaact |
53704077 |
T |
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| Q |
116 |
tagcaaggatttggcgaaatccaaattggaagtgggcattctaacagagaatatgaatttcgagaataactgggcaatagcgggtcaatgatcccatcat |
215 |
Q |
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| T |
53704078 |
tagcaaggatttggcgaaatccaaattggaagtgggcattctaaccgagaatatgaatttcgagaataactgggcaatagcgggtcaatgatcccatcat |
53704177 |
T |
|
| Q |
216 |
ataatctaaagatgccaaaatcatgtttcccacaagcatcatcatgattaccctctgaataatcatccgtgaaatagatacaatctccacaacatcctac |
315 |
Q |
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| T |
53704178 |
ataatctaaagatgccaaaatcatgtttcccacaagcatcatcatgattatcctctgaataatcatccgtgaaatagatacaatctccacaacatcctac |
53704277 |
T |
|
| Q |
316 |
aaaatcaccagcagaaaaacacactgaacaatacaccccaacaaacaaagccttatcacccaacgcttcaattctattccatgccatggcattccaatcc |
415 |
Q |
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| T |
53704278 |
aaaatcaccagcagaaaaacacattgaagaattcaccccaacaaacaaagccttatcacccaacgcttcaattctattccatgccatggcattccaatcc |
53704377 |
T |
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| Q |
416 |
atcttaaaaaccgtaaatcccaccgtcctatacacaagcatatcataattgggttcatccgaaaaatcctcttccaaaatccgatttaccaacaacatat |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53704378 |
atcttaaaaaccgtaaatcccaccgtcctatacacaagcatatcataattgggttcatccgaaaaatcctcttccaaaacccgatttaccaacaacatat |
53704477 |
T |
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| Q |
516 |
cctcaccagagaacaccacatagtgaatatccccggagaattgaacaggcaccgtcatctgaaaaatggaaactcgatgactattaacctcgcacacagc |
615 |
Q |
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| T |
53704478 |
cctcaccagagaacaccacatagtgaatatccccggagaattgaacaggcaccgtcatctgaaaaatggaaactcgatgactattaacatcgcacacagc |
53704577 |
T |
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| Q |
616 |
aattattcctccgttgct |
633 |
Q |
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|||| ||||||| ||||| |
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| T |
53704578 |
aattgttcctcctttgct |
53704595 |
T |
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