View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_high_42 (Length: 344)

Name: NF2495_high_42
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_high_42
NF2495_high_42
[»] chr4 (19 HSPs)
chr4 (14-324)||(15622838-15623147)
chr4 (65-324)||(9069398-9069655)
chr4 (187-289)||(33744043-33744145)
chr4 (187-299)||(33746490-33746603)
chr4 (33-138)||(19183317-19183421)
chr4 (33-100)||(15162156-15162222)
chr4 (46-101)||(28019735-28019790)
chr4 (39-103)||(32862073-32862137)
chr4 (46-101)||(23399868-23399923)
chr4 (46-136)||(16654968-16655058)
chr4 (14-91)||(19659840-19659917)
chr4 (14-137)||(15699970-15700093)
chr4 (187-299)||(32862218-32862330)
chr4 (46-101)||(10724695-10724750)
chr4 (46-101)||(10938464-10938519)
chr4 (53-100)||(25117295-25117342)
chr4 (90-136)||(11324791-11324836)
chr4 (187-252)||(15699856-15699922)
chr4 (46-100)||(33898681-33898735)
[»] chr7 (28 HSPs)
chr7 (47-299)||(6045753-6046005)
chr7 (65-324)||(10661316-10661573)
chr7 (187-286)||(42636780-42636879)
chr7 (202-299)||(10038203-10038300)
chr7 (39-299)||(21260858-21261116)
chr7 (187-324)||(23082224-23082361)
chr7 (14-137)||(26132561-26132683)
chr7 (34-137)||(16437198-16437300)
chr7 (46-100)||(11521085-11521139)
chr7 (46-101)||(14165599-14165654)
chr7 (15-101)||(20924777-20924862)
chr7 (47-100)||(15506700-15506753)
chr7 (65-137)||(14927101-14927173)
chr7 (65-137)||(15350567-15350639)
chr7 (14-99)||(16207553-16207639)
chr7 (186-252)||(10280426-10280493)
chr7 (33-100)||(11588885-11588951)
chr7 (14-101)||(20991943-20992031)
chr7 (65-134)||(23082412-23082481)
chr7 (187-299)||(24902676-24902788)
chr7 (33-100)||(645556-645622)
chr7 (46-133)||(7586169-7586256)
chr7 (33-100)||(11999304-11999369)
chr7 (14-100)||(12326211-12326299)
chr7 (187-252)||(16437348-16437414)
chr7 (187-253)||(23960599-23960665)
chr7 (33-98)||(10280232-10280296)
chr7 (45-106)||(24049873-24049934)
[»] chr8 (7 HSPs)
chr8 (65-299)||(9996951-9997183)
chr8 (187-324)||(20254325-20254462)
chr8 (11-137)||(25240759-25240884)
chr8 (47-100)||(45136546-45136599)
chr8 (33-101)||(22485554-22485621)
chr8 (39-136)||(20254511-20254608)
chr8 (51-100)||(27925123-27925172)
[»] chr3 (18 HSPs)
chr3 (65-286)||(6579035-6579254)
chr3 (187-322)||(17042205-17042340)
chr3 (41-254)||(286416-286627)
chr3 (65-299)||(979851-980083)
chr3 (14-137)||(21253631-21253754)
chr3 (46-100)||(13791110-13791164)
chr3 (14-101)||(19634281-19634369)
chr3 (33-100)||(24195945-24196011)
chr3 (33-100)||(44452905-44452970)
chr3 (33-100)||(7028744-7028810)
chr3 (33-100)||(18063879-18063945)
chr3 (33-100)||(18548070-18548136)
chr3 (46-100)||(1918917-1918971)
chr3 (54-100)||(18483045-18483091)
chr3 (46-100)||(23954231-23954285)
chr3 (14-100)||(13515267-13515354)
chr3 (47-137)||(31650131-31650213)
chr3 (89-137)||(7495570-7495618)
[»] chr1 (13 HSPs)
chr1 (187-322)||(12753633-12753768)
chr1 (14-137)||(17851010-17851133)
chr1 (14-137)||(1625977-1626099)
chr1 (66-299)||(25349677-25349908)
chr1 (14-137)||(23477570-23477693)
chr1 (14-100)||(24986383-24986470)
chr1 (187-253)||(10339678-10339744)
chr1 (90-136)||(11085306-11085351)
chr1 (90-136)||(40312870-40312915)
chr1 (47-100)||(20200758-20200811)
chr1 (14-80)||(20840955-20841022)
chr1 (187-299)||(1626146-1626258)
chr1 (33-101)||(13165815-13165882)
[»] chr6 (24 HSPs)
chr6 (39-301)||(17879139-17879400)
chr6 (39-156)||(17869531-17869648)
chr6 (187-299)||(24542227-24542339)
chr6 (39-299)||(11960897-11961155)
chr6 (15-103)||(15930516-15930603)
chr6 (14-137)||(23882332-23882455)
chr6 (46-100)||(17855629-17855683)
chr6 (46-100)||(19894341-19894395)
chr6 (14-100)||(14259317-14259404)
chr6 (14-99)||(19171817-19171903)
chr6 (39-103)||(24564142-24564206)
chr6 (14-100)||(29253353-29253439)
chr6 (53-100)||(33666232-33666279)
chr6 (187-252)||(23882218-23882284)
chr6 (186-227)||(15930394-15930435)
chr6 (14-100)||(19077544-19077631)
chr6 (47-100)||(25969775-25969828)
chr6 (47-100)||(25974215-25974268)
chr6 (48-100)||(8465343-8465395)
chr6 (187-299)||(24564288-24564400)
chr6 (33-100)||(17527557-17527623)
chr6 (65-103)||(26965242-26965280)
chr6 (65-137)||(16308993-16309065)
chr6 (33-101)||(17235016-17235083)
[»] scaffold1001 (1 HSPs)
scaffold1001 (187-299)||(536-648)
[»] chr5 (19 HSPs)
chr5 (39-302)||(13941479-13941739)
chr5 (39-101)||(20714411-20714473)
chr5 (46-100)||(22404434-22404488)
chr5 (14-100)||(38405762-38405849)
chr5 (14-100)||(18221511-18221597)
chr5 (14-100)||(22082361-22082447)
chr5 (14-100)||(23757928-23758015)
chr5 (14-100)||(23823384-23823471)
chr5 (33-100)||(9422187-9422252)
chr5 (188-227)||(23624449-23624488)
chr5 (33-100)||(24190283-24190349)
chr5 (46-100)||(22251713-22251767)
chr5 (15-100)||(26037181-26037267)
chr5 (14-137)||(13338989-13339111)
chr5 (187-253)||(20714262-20714328)
chr5 (16-100)||(26328886-26328970)
chr5 (33-137)||(30605326-30605429)
chr5 (187-219)||(18221682-18221714)
chr5 (33-100)||(23624297-23624363)
[»] chr2 (8 HSPs)
chr2 (16-137)||(21530785-21530906)
chr2 (14-106)||(19445002-19445094)
chr2 (56-137)||(15328769-15328850)
chr2 (46-100)||(12910925-12910979)
chr2 (46-100)||(22611323-22611377)
chr2 (46-100)||(24789832-24789886)
chr2 (188-253)||(21249717-21249782)
chr2 (65-137)||(21249831-21249903)
[»] scaffold0003 (2 HSPs)
scaffold0003 (34-137)||(26828-26930)
scaffold0003 (187-252)||(26978-27044)
[»] scaffold0185 (1 HSPs)
scaffold0185 (46-100)||(2040-2094)
[»] scaffold0059 (1 HSPs)
scaffold0059 (53-100)||(48065-48112)
[»] scaffold0004 (1 HSPs)
scaffold0004 (46-100)||(356968-357022)
[»] scaffold0226 (3 HSPs)
scaffold0226 (14-100)||(7210-7297)
scaffold0226 (14-100)||(17797-17884)
scaffold0226 (14-100)||(27191-27278)
[»] scaffold0213 (1 HSPs)
scaffold0213 (53-100)||(8252-8299)
[»] scaffold0103 (1 HSPs)
scaffold0103 (54-100)||(25350-25396)
[»] scaffold0037 (1 HSPs)
scaffold0037 (46-100)||(109932-109986)
[»] scaffold0020 (1 HSPs)
scaffold0020 (54-100)||(12183-12229)
[»] scaffold0088 (1 HSPs)
scaffold0088 (46-87)||(37024-37065)
[»] scaffold0064 (1 HSPs)
scaffold0064 (65-133)||(52570-52638)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 15622838 - 15623147
Alignment:
Q  14 agactcaaaacactaaaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaata 113  Q
    ||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15622838 agactcaaaaccctaaaactaaactttttagaaacgacggcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggggtaata 15622937  T
Q  114 aatcttgttgggcttcagaacaaattacagatcattcatatgatctaaaaatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctt 213  Q
    || |||||||||||||||||||||||  ||||| || | |||||||||||| ||||||||||       |||||||||||| |||  ||||||| |||||    
T  15622938 aaccttgttgggcttcagaacaaattgtagatcgttaagatgatctaaaaacatgaatcagt-aacaaataaagaaagtccaaaacggtaggaacatctt 15623036  T
Q  214 taggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatgtgcattccttgacc 313  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||    
T  15623037 taggaacttccaaacatgtctaaataattcctaaaatattaccaatcttttaggaataacaaaacaactgattttgaacagatatgcgcgttgcttgacc 15623136  T
Q  314 aataagatatg 324  Q
    |||||||||||    
T  15623137 aataagatatg 15623147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 324
Target Start/End: Original strand, 9069398 - 9069655
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatcattcatatgatctaaaaa 164  Q
    ||||||||||||||||| |  || |||| ||||| ||||||||  ||  | |||||||||||||||||| ||||| || ||| ||||  | ||||| |||    
T  9069398 aattaggtcttgaagtcttgtttatatattgaagtaatacggttcaaatagtcttgttgggcttcagaataaattgcaaatcgttcagctaatctacaaa 9069497  T
Q  165 tatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatctttt 264  Q
     ||||||||||        || ||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  9069498 catgaatcagtaccaaa--aaggaaagtcctaaaaagtaggaatatttttaggaacttccaaacatatccaaataattcttaaaatattaccaatctttt 9069595  T
Q  265 aggaataacaacacaactgattttgaacagatatgtgcattccttgaccaataagatatg 324  Q
    |||||||| || ||||||||||||| ||||||||| || || |||| |||  ||||||||    
T  9069596 aggaataataaaacaactgattttgtacagatatgcgcgttgcttggccaccaagatatg 9069655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 33744043 - 33744145
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  33744043 gaaagtcctaaaaagtaggaacatctttaagaacttccaaacatatccaaataattcctaaaatattaccaatcttttaggaataataaaacaagtgatt 33744142  T
Q  287 ttg 289  Q
    |||    
T  33744143 ttg 33744145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 33746490 - 33746603
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcct-aaaatattaccaatcttttaggaataacaacacaactgat 285  Q
    ||||||||||||| ||| ||| |||||| ||||||||||||||  |||||||||||||| ||||||||| ||||||||||||||||| || |||| | ||    
T  33746490 gaaagtcctaaaaagtaagaacatcttttggaacttccaaacagatccaaataattcctaaaaatattatcaatcttttaggaataataaaacaagttat 33746589  T
Q  286 tttgaacagatatg 299  Q
    | || |||||||||    
T  33746590 tatgtacagatatg 33746603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 19183421 - 19183317
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcaga 132  Q
    |||||||||||||| ||||  ||||||| |||||||||||||||| ||| |||||| ||||||||||||||||    ||| || ||||||||||||||||    
T  19183421 taaactttttagaa-tgacgtcttgaatgatcaattaggtcttgatgtcttcctttcatactgaagcaatacgagccaattaaccttgttgggcttcaga 19183323  T
Q  133 acaaat 138  Q
    ||||||    
T  19183322 acaaat 19183317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 15162222 - 15162156
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||  |||| ||||||||||||    
T  15162222 taaactttttagaa-tgatggcttgaataatcaattaggtcttgaagtctcccttatatactgaagca 15162156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 28019735 - 28019790
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  28019735 aatgacggcttgaataaacaattaggtcttgaagtcttccttatatactgaagcaa 28019790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 32862073 - 32862137
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaata 103  Q
    |||| |||||||| |||||||| | |||||||||||||||||| ||||| ||| |||||||||||    
T  32862073 tttttgaaatgacggcttgaatgaacaattaggtcttgaagtcttccttatatcctgaagcaata 32862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 23399923 - 23399868
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||||| |||||| | |||||||||||||||||| ||||| |||||||||||||    
T  23399923 aatgacagtttgaatgaacaattaggtcttgaagtcttccttatatactgaagcaa 23399868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 16655058 - 16654968
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaa 136  Q
    |||||| |||||||| |  ||||| ||||||||||||||  | |||| |||||||| ||||  || ||| |||||||||||||||||||||    
T  16655058 aatgacggcttgaatgaagaattaagtcttgaagtcctcaatatatattgaagcaacacgggctattaagtcttgttgggcttcagaacaa 16654968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 19659840 - 19659917
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttat 91  Q
    ||||||||||| ||||||  |||||||||||||| |||| |||||||||   ||||||||||||||||| |||||||||    
T  19659840 agactcaaaaccctaaaaactaaactttttagaa-tgacggcttgaatacataattaggtcttgaagtcttccttttat 19659917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 15700093 - 15699970
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaat 112  Q
    ||||||||||| ||||||| |||||||||||||| |||||| ||||||  |  |||||||||||||||   |||| ||||||||||||   |||   ||     
T  15700093 agactcaaaaccctaaaagctaaactttttagaa-tgacagattgaatggttcattaggtcttgaagtttcccttatatactgaagcagctcgggtcaaa 15699995  T
Q  113 aaatcttgttgggcttcagaacaaa 137  Q
     | ||||||||||||||||||||||    
T  15699994 tactcttgttgggcttcagaacaaa 15699970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 32862218 - 32862330
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||  |||  |||||||||||| |||||||| |||||| | | |||||||||||   | ||  |||||||||| | |||||||||||    
T  32862218 gaaagtcctaaaaggtgagaacttctttaggaactgccaaacatatccaaagattccctaaaatatttttactccattaggaataaaatcacaactgatt 32862317  T
Q  287 ttgaacagatatg 299  Q
     |||||| |||||    
T  32862318 ctgaacaaatatg 32862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 10724695 - 10724750
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||| |||| ||| ||||||||||||||||||||  |||| |||||||||||||    
T  10724695 aatgacggcttaaatgatcaattaggtcttgaagtctcccttatatactgaagcaa 10724750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 10938464 - 10938519
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||| |||| ||| ||||||||||||||||||||  |||| |||||||||||||    
T  10938464 aatgacggcttaaatgatcaattaggtcttgaagtctcccttatatactgaagcaa 10938519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 25117295 - 25117342
Alignment:
Q  53 gcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  25117295 gcttgaattaacaattaggtcttgaagtcttccttatatactgaagca 25117342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 11324836 - 11324791
Alignment:
Q  90 atactgaagcaatacggtgtaataaatcttgttgggcttcagaacaa 136  Q
    ||||||||||||||||| || || |||||||||||||||||||||||    
T  11324836 atactgaagcaatacgg-gtcattaatcttgttgggcttcagaacaa 11324791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 15699922 - 15699856
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttcc-aaacatgtccaaataattcctaaaatat 252  Q
    ||||||||||||||||||||| |||||||||| | ||| |||||  | |||||| ||||||||||||    
T  15699922 gaaagtcctaaaatgtaggaacatctttaggagcgtccaaaacaacttcaaatatttcctaaaatat 15699856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 33898735 - 33898681
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||||||| | |||||||||||||| ||| ||||| |||| |||||||    
T  33898735 aatgacagcttgaatgaacaattaggtcttgacgtcttccttatatagtgaagca 33898681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 299
Target Start/End: Original strand, 6045753 - 6046005
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatc 146  Q
    |||||||||||||||   ||||||||||||||||| |||||||||||||||| |||| ||  |||  || |||||||||||||||||||||||  |||||    
T  6045753 atgacagcttgaatacctaattaggtcttgaagtcttccttttatactgaagaaatatgggctaaataaccttgttgggcttcagaacaaattgtagatc 6045852  T
Q  147 attcatatgatctaa-aaatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcct 245  Q
     ||||  |||||||  ||| | |||||| |       ||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |  ||    
T  6045853 gttcagctgatctacgaaacaagaatcaatgacaaa-taaggaaagtcctaatatgtaggaacatctttaggaacttccaaacatatccaaatattctct 6045951  T
Q  246 aaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatg 299  Q
    ||||||||| || |||||||||||||||| ||||||||||| |||| |||||||    
T  6045952 aaaatattatcactcttttaggaataacaccacaactgattctgaatagatatg 6046005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 324
Target Start/End: Original strand, 10661316 - 10661573
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatcattcatatgatctaaaaa 164  Q
    ||||||||||||||||  |  || ||||||||||||||||||   ||  | |||||||||||||||||| ||||| |||||| ||||  ||||||| |||    
T  10661316 aattaggtcttgaagttttgtttatatactgaagcaatacgggtcaaatagtcttgttgggcttcagaataaattgcagatcgttcagctgatctacaaa 10661415  T
Q  165 tatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatctttt 264  Q
     ||||||||||        || |||||| |||||| ||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||     
T  10661416 catgaatcagtaccaaa--aaggaaagtactaaaaagtaggaacatctttaagaactttcaaacatatccaaataattcctaaaatattaccaatctttc 10661513  T
Q  265 aggaataacaacacaactgattttgaacagatatgtgcattccttgaccaataagatatg 324  Q
    |||||||| || |||||||||| || | ||||||| || || |||| |||  ||||||||    
T  10661514 aggaataataaaacaactgattctgtatagatatgcgcgttgcttggccaccaagatatg 10661573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 42636780 - 42636879
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  42636780 gaaagtcctaaaaagtaggaacatctttaggaatttccaaacatatccaaataattcctaaaatattaccaatcttttaggaataataaaacaactgatt 42636879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 10038300 - 10038203
Alignment:
Q  202 taggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatg 299  Q
    |||||| |||||||||||||||||||||| |||||||| | |||||||||||| || || ||||||||||| ||||||||||||| ||||||||||||    
T  10038300 taggaacatctttaggaacttccaaacatatccaaatattccctaaaatattatcactcatttaggaataaaaacacaactgattctgaacagatatg 10038203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 299
Target Start/End: Original strand, 21260858 - 21261116
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaat 138  Q
    |||||||||||||  ||||||| |  ||||||||||||||||| ||||| ||||||||||||||| ||  | |  || ||||||||| ||||||||||      
T  21260858 ttttagaaatgacgacttgaatgaataattaggtcttgaagtcttccttatatactgaagcaatatgggctcaataaccttgttgggtttcagaacaatg 21260957  T
Q  139 tacagatcattcatatgatctaaa-aatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaa 237  Q
    ||  |||| ||||  ||||||| | || | ||||||||       ||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||    
T  21260958 ta--gatcgttcaactgatctacataacaagaatcagtaacaaa-taaggaaagtcataatatgtaggaacatctttaggaacttccaaacatatccaaa 21261054  T
Q  238 taattcctaaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatg 299  Q
    || | |||||||||||   | || ||||| ||||| | ||||||||||| ||||||||||||    
T  21261055 tattccctaaaatattgttactcctttagaaataaaaccacaactgattctgaacagatatg 21261116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 23082361 - 23082224
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||| || ||||| | |||||||||||   | |||||||||||||| | |||| ||||||    
T  23082361 gaaagtcgtaatatgtaggaacatctttaggaacttccaaacatatctaaatattccctaaaatattgttactcttttaggaataaaatcacagctgatt 23082262  T
Q  287 ttgaacagatatgtgcattccttgaccaataagatatg 324  Q
     |||| ||||||| || || ||||| ||| ||||||||    
T  23082261 ctgaatagatatgcgcgttgcttgatcaacaagatatg 23082224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 26132683 - 26132561
Alignment:
Q  14 agactcaaaacactaaaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaata 113  Q
    ||||||||||| |||||| || ||||||||||| |||| |||||||||   ||||||||||||||||| ||||| |||||||||| |||| ||  | ||     
T  26132683 agactcaaaaccctaaaactagactttttagaa-tgacggcttgaatacctaattaggtcttgaagtcttccttatatactgaagaaatatgggctgatt 26132585  T
Q  114 aatcttgttgggcttcagaacaaa 137  Q
    || |||||||||||||||||||||    
T  26132584 aaccttgttgggcttcagaacaaa 26132561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 16437198 - 16437300
Alignment:
Q  34 aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaa 133  Q
    ||||||||||||| |||  ||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||   ||  | ||||| ||||||||||||    
T  16437198 aaactttttagaa-tgatggcttgaataatcaattaggtcttgatgtcttccttttatactgaagcagcacgggtcaaatattcttgctgggcttcagaa 16437296  T
Q  134 caaa 137  Q
    ||||    
T  16437297 caaa 16437300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 11521139 - 11521085
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  11521139 aatgacggcttgaataatcaattaggtcttgaagtcttccttatatactgaagca 11521085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 14165599 - 14165654
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||| |||||||| | |||||||||||||||||| |||||||||||||||||||    
T  14165599 aatgacggcttgaatgaacaattaggtcttgaagtcttccttttatactgaagcaa 14165654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 20924862 - 20924777
Alignment:
Q  15 gactcaaaacactaaaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||||||| |||||  || ||||||||||| ||||| |||||||  ||||||||||||||||||  | |||||||||||||||||    
T  20924862 gactcaaaaccctaaagctagactttttagaa-tgacatcttgaattctcaattaggtcttgaagtatttcttttatactgaagcaa 20924777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 15506700 - 15506753
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  15506700 atgacggcttgaataagcaattaggtcttgaagtcttccttatatactgaagca 15506753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 14927101 - 14927173
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    ||||||||||||||||| ||||||||||||||||||||| ||   ||    ||||||||||||||||||||||    
T  14927101 aattaggtcttgaagtcttccttttatactgaagcaatatgggccaaatggtcttgttgggcttcagaacaaa 14927173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 15350567 - 15350639
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    ||||||||||||||||| ||||||||||||||||||||| ||   ||    ||||||||||||||||||||||    
T  15350567 aattaggtcttgaagtcttccttttatactgaagcaatatgggccaaatggtcttgttgggcttcagaacaaa 15350639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 16207639 - 16207553
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagc 99  Q
    ||||||||||| |||||| |  ||||||||||| | |||  |||||||||| |||||||||||||||||| ||||| |||||||||||    
T  16207639 agactcaaaaccctaaaaatctaaactttttagta-tgatggcttgaataaacaattaggtcttgaagtcttccttatatactgaagc 16207553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 10280426 - 10280493
Alignment:
Q  186 agaaagtcctaaaatgtaggaaaatctttaggaacttcc-aaacatgtccaaataattcctaaaatat 252  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||  | |||||| ||||||||||||    
T  10280426 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatat 10280493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 11588885 - 11588951
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||| || ||| |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  11588885 taaactttttagtaa-gacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 11588951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 20991943 - 20992031
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    ||||||||||| |||||| |  ||||||||||| | |||| | |||||| ||||||||||||||||||||  |||| |||||||||||||    
T  20991943 agactcaaaaccctaaaaatctaaactttttagta-tgacggattgaatgatcaattaggtcttgaagtctcccttatatactgaagcaa 20992031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 23082481 - 23082412
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaac 134  Q
    ||||||||||| ||||| ||||| ||||||||||||||| ||  | || || ||||||||||||||||||    
T  23082481 aattaggtcttcaagtcttccttatatactgaagcaatatgggcttattaaccttgttgggcttcagaac 23082412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 24902676 - 24902788
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||  | |||||| | | |||||||||   | |||||| ||||||| | | ||||| |||    
T  24902676 gaaagtcttaatatgtaggaacatctttaggaacttccaaacaaattcaaatattccttaaaatattgttactcttttgggaataaaaccgcaactaatt 24902775  T
Q  287 ttgaacagatatg 299  Q
     |||||| |||||    
T  24902776 ctgaacatatatg 24902788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 645556 - 645622
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||| | |||| ||||||||||  ||||||||||||||||| || || ||||||||||||    
T  645556 taaactttttagta-tgacggcttgaataaagaattaggtcttgaagtcttctttatatactgaagca 645622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 7586256 - 7586169
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaa 133  Q
    |||||| |||||||||   |||||| |||||||||| ||||| ||||||||||||||| ||  | || || ||| |||||||||||||    
T  7586256 aatgacggcttgaataccaaattagatcttgaagtcttccttatatactgaagcaatatgggctcattaaccttcttgggcttcagaa 7586169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 11999304 - 11999369
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||| ||||  ||||||||| ||||||||| |||||||| ||||| ||||||||||||    
T  11999304 taaactttttagaa-tgacgacttgaataa-caattaggttttgaagtcttccttatatactgaagca 11999369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 12326211 - 12326299
Alignment:
Q  14 agactcaaaacactaaaag--taaactttttagaaatgacagcttgaat-aatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| ||||||   |||||||||||| | ||||| ||||||| ||||||||||||||| |||||  |||| ||||||||||||    
T  12326211 agactcaaaaccctaaaaacctaaactttttagta-tgacaacttgaatgaatcaattaggtcttaaagtctcccttatatactgaagca 12326299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 16437348 - 16437414
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttcc-aaacatgtccaaataattcctaaaatat 252  Q
    |||||||||||||| |||||| |||||||||||| ||| |||||  | |||||| ||||||||||||    
T  16437348 gaaagtcctaaaatataggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatat 16437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 23960599 - 23960665
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatatt 253  Q
    ||||||||||| | ||||||| |||||| ||||||||||||| | ||||| || | |||||||||||    
T  23960599 gaaagtcctaatacgtaggaacatctttcggaacttccaaacctatccaattattccctaaaatatt 23960665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 10280232 - 10280296
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaag 98  Q
    |||||||||||||| | || ||||||||| |  |||||||||||| ||| ||||||||||||||||    
T  10280232 taaactttttagaa-taacggcttgaatagtacattaggtcttgatgtcttccttttatactgaag 10280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 24049873 - 24049934
Alignment:
Q  45 aaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacgg 106  Q
    ||||||| ||||||||||| |||||||||||| |||| |  ||  |||||||||||||||||    
T  24049873 aaatgacggcttgaataatgaattaggtcttgcagtcttgtttaaatactgaagcaatacgg 24049934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 65 - 299
Target Start/End: Original strand, 9996951 - 9997183
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatcattcatatgatctaaaaa 164  Q
    ||||||||||||||||| |  || ||||| |||| |||||||   ||  | |||||||||||||||||| ||||| |||||| ||||  ||||||| |||    
T  9996951 aattaggtcttgaagtcttgtttatatacagaagtaatacgggtcaaatagtcttgttgggcttcagaataaattgcagatcgttcagctgatctacaaa 9997050  T
Q  165 tatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatctttt 264  Q
     ||||||||||        || ||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9997051 catgaatcagtaccaaa--aaggaaagtcctaaaaagtaggaacatctttatgaacttccaaacatatccaaataattcctaaaatattatcaatctttt 9997148  T
Q  265 aggaataacaacacaactgattttgaacagatatg 299  Q
    |||||||| || |||||||||| || |||||||||    
T  9997149 aggaataataaaacaactgattatgtacagatatg 9997183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 20254462 - 20254325
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||| |||||| | | |||||||||||   | |||||||||||||| | |||||||||||    
T  20254462 gaaagtcctaaaaggtaggaatatctttaggaactgccaaacatatccaaagattccctaaaatattgttactcttttaggaataaaaccacaactgatt 20254363  T
Q  287 ttgaacagatatgtgcattccttgaccaataagatatg 324  Q
    ||||||||||||| || || ||||  ||| ||||||||    
T  20254362 ttgaacagatatgcgcgttgcttggtcaacaagatatg 20254325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 25240759 - 25240884
Alignment:
Q  11 cacagactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgt 109  Q
    |||||| | ||||| ||||||| |||||||||||| | |||| |||||||||   ||||||||||||||||| ||||| ||||||||||||||| |   |    
T  25240759 cacagagttaaaaccctaaaagctaaactttttagta-tgacggcttgaatacctaattaggtcttgaagtcttccttctatactgaagcaatatgtgct 25240857  T
Q  110 aataaatcttgttgggcttcagaacaaa 137  Q
    ||| |||||| |||||||| ||||||||    
T  25240858 aat-aatcttattgggctttagaacaaa 25240884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 45136546 - 45136599
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  45136546 atgacggcttgaataatcaattaggtcttgaagtcttccttatatactcaagca 45136599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 22485554 - 22485621
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||||||||| | |||| |||||||| | |||||||||||||||||| ||||| |||||||||||||    
T  22485554 taaactttttagta-tgacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagcaa 22485621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 20254608 - 20254511
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaa 136  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| | ||| |||||||||| ||||  |  | |  || ||||||||||||||||||||    
T  20254608 ttttagaaatgacggcttgaatgaataattaggtcttgaagtctttcttatatactgaaggaatataggctcaataaccttgttgggcttcagaacaa 20254511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 27925172 - 27925123
Alignment:
Q  51 cagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  27925172 cagcttgaatgatcaattaggtcttgaagtctcccttatatactgaagca 27925123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 286
Target Start/End: Complemental strand, 6579254 - 6579035
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatcattcatatgatctaaaaa 164  Q
    ||||||||||||||||| |  || |||| |||||||||||||   ||  | |||||||||||||||||| ||||| |||||| ||||  ||||||| |||    
T  6579254 aattaggtcttgaagtcttgtttatatattgaagcaatacggatcaaatagtcttgttgggcttcagaataaattgcagatcgttcaactgatctacaaa 6579155  T
Q  165 tatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatctttt 264  Q
     ||||||||||        || ||||||||||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  6579154 catgaatcagtaccaaa--aaggaaagtcctaaaaagtaggaacatctctaggaatttccaaacatatccaaataattcctaaaatattaccaatctttt 6579057  T
Q  265 aggaataacaacacaactgatt 286  Q
    |||||||| || |||| |||||    
T  6579056 aggaataataaaacaattgatt 6579035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 322
Target Start/End: Complemental strand, 17042340 - 17042205
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||||||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| || |||  |||||    
T  17042340 gaaagtcctaaaaagtaggaacatctttaggaacttccaaacaaatccaaatgattcctaaaatattaccaatcttttaggaataataaaacacttgatt 17042241  T
Q  287 ttgaacagatatgtgcattccttgaccaataagata 322  Q
     || |||||||||  |||| ||||  ||||||||||    
T  17042240 atgtacagatatgcacattgcttggtcaataagata 17042205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 254
Target Start/End: Complemental strand, 286627 - 286416
Alignment:
Q  41 ttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaatta 140  Q
    ||||||||||| |||||||||   ||||||||||||||||| ||||| |||||| |||||||| |   ||||||| |||||| |||||||||||||| |     
T  286627 ttagaaatgacggcttgaatacctaattaggtcttgaagtcttccttatatactaaagcaatatgtgctaataaaccttgttaggcttcagaacaaagt- 286529  T
Q  141 cagatcattcatatgatcta-aaaatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaata 239  Q
     ||||| | ||  ||||||| |||| | ||||||||        |||||||| ||||| | ||||||| |||||| ||||||||||||||| ||||| ||    
T  286528 -agatcgtccagctgatctacaaaacacgaatcagtaacaaaa-aaagaaagacctaagaagtaggaacatctttcggaacttccaaacatatccaatta 286431  T
Q  240 attcctaaaatatta 254  Q
     | || |||||||||    
T  286430 ttcccgaaaatatta 286416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 299
Target Start/End: Complemental strand, 980083 - 979851
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatcattcatatgatctaaa-a 163  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||  | || || |||||||||||||| |||||| ||  |||| ||||  |||| || | |    
T  980083 aattaggtcttgaagtcttccttatatcctgaagcaatatgggctcatgaaccttgttgggcttcataacaaagta--gatcgttcaactgatgtacata 979986  T
Q  164 atatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttt 263  Q
    | | ||||||||       ||| ||||||||||| ||||| |||||||||||||||||||||||||  || ||||| | |||||||||||   | || ||    
T  979985 acaagaatcagtaacaaa-taaggaaagtcctaatatgtacgaaaatctttaggaacttccaaacaaatctaaatattacctaaaatattgttactcctt 979887  T
Q  264 taggaataacaacacaactgattttgaacagatatg 299  Q
    | ||||||| | ||||||||||| |||| |||||||    
T  979886 tgggaataaaaccacaactgattctgaatagatatg 979851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 21253754 - 21253631
Alignment:
Q  14 agactcaaaacacta-aaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaat 112  Q
    ||||||||||| ||| ||| |||||||||||||| |||  |||||||| |  ||||||||||||| ||| || || ||||||||||||||| ||  ||||    
T  21253754 agactcaaaaccctacaaactaaactttttagaa-tgagggcttgaatgaataattaggtcttgatgtcttcattatatactgaagcaatatgggctaat 21253656  T
Q  113 aaatcttgttgggcttcagaacaaa 137  Q
    ||| ||| |||||||||||||||||    
T  21253655 aaaccttattgggcttcagaacaaa 21253631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 13791110 - 13791164
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13791110 aatgacggcttgaataatcaattaggtcttgaagtcttccttatatactgaagca 13791164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 19634281 - 19634369
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    ||||||||||| |||||| |  ||||||||||| | |||| |||||||| | |||||||||||||||||| ||||| |||||||||||||    
T  19634281 agactcaaaaccctaaaaatctaaactttttagta-tgacggcttgaattaacaattaggtcttgaagtcttccttatatactgaagcaa 19634369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 24195945 - 24196011
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||| | |||| |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  24195945 taaactttttagta-tgacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 24196011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 44452905 - 44452970
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||| | ||| ||||||||||||    
T  44452905 taaactttttagaa-tgacggcttgaataa-caattaggtcttgaagtctttcttatatactgaagca 44452970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 7028810 - 7028744
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| | ||||| |||| ||||| |||||||||||||||||| ||||| | ||||||||||    
T  7028810 taaacttttta-atatgacggcttaaataaacaattaggtcttgaagtcttccttatgtactgaagca 7028744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 18063945 - 18063879
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||| | |||| |||||||| | ||||||||| |||||||| ||||| ||||||||||||    
T  18063945 taaactttttagta-tgacggcttgaatgaacaattaggtattgaagtcttccttatatactgaagca 18063879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 18548070 - 18548136
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||| |||| |||||||| | ||||||||| |||||||| || || ||||||||||||    
T  18548070 taaactttttagaa-tgacggcttgaatgaacaattaggttttgaagtcttctttatatactgaagca 18548136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 1918971 - 1918917
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||| | |||||||||||| ||||| ||||| ||||||||||||    
T  1918971 aatgacggcttgaatgaacaattaggtcttaaagtcttccttatatactgaagca 1918917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 18483091 - 18483045
Alignment:
Q  54 cttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  18483091 cttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 18483045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 23954285 - 23954231
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||| | |||||||||||||||||| || || ||||||||||||    
T  23954285 aatgacggcttgaatgaacaattaggtcttgaagtcttctttatatactgaagca 23954231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 13515354 - 13515267
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  ||||||||||| | |||| |||||||| || ||||| ||||||||||| ||||| || |||||||||    
T  13515354 agactcaaaaccctaaaaatctaaactttttagta-tgacggcttgaatgataaattaagtcttgaagtcttccttataaactgaagca 13515267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 31650131 - 31650213
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    ||||| ||||||||||||||||| ||||||||        | ||||||||||||| ||||  |||||| ||||||||| ||||||||||||    
T  31650131 atgacggcttgaataatcaattaagtcttgaa--------tatatactgaagcaacacgggctaataagtcttgttggacttcagaacaaa 31650213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 7495618 - 7495570
Alignment:
Q  89 tatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    ||||||||||||||| ||  ||  |||||||||||||||||||||||||    
T  7495618 tatactgaagcaatatgggttataaaatcttgttgggcttcagaacaaa 7495570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 322
Target Start/End: Original strand, 12753633 - 12753768
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||| || ||||||||||    
T  12753633 gaaagtcctaaaaagtaggaacatctttaggaacttccaaacatatccaaatgattcataaaatattaccaatcttttacgaataataaaacaactgatt 12753732  T
Q  287 ttgaacagatatgtgcattccttgaccaataagata 322  Q
     ||  |||||||| || || ||||  ||||||||||    
T  12753733 atgtgcagatatgcgcgttgcttggtcaataagata 12753768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 17851133 - 17851010
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaat 112  Q
    ||||||||||| ||||||  || ||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||  ||||    
T  17851133 agactcaaaaccctaaaaactacactttttagaa-tgacggcttgaataatcaattaggtcttgaagtcttccttatatactgaagaaatatgggctaat 17851035  T
Q  113 aaatcttgttgggcttcagaacaaa 137  Q
    ||| |||||||||||||||||||||    
T  17851034 aaaccttgttgggcttcagaacaaa 17851010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 1625977 - 1626099
Alignment:
Q  14 agactcaaaacactaaaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaata 113  Q
    ||||||||||| |||||| || |||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||  |||      
T  1625977 agactcaaaaccctaaaactagactttt-agaaatgacggcttgaataatcaattaggtcttgaagttttccttttatactgaagcaatatgggctaaat 1626075  T
Q  114 aatcttgttgggcttcagaacaaa 137  Q
    || |||||||||||||| ||||||    
T  1626076 aaccttgttgggcttcataacaaa 1626099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 25349908 - 25349677
Alignment:
Q  66 attaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaattacagatcattcatatgatctaaaa-a 164  Q
    |||||||||||||||| |||||||||||||||||||||| |  | |  || ||||||||||||||||||||||| || ||| ||||  |||||||    |    
T  25349908 attaggtcttgaagtcttccttttatactgaagcaatacaggctcaataaccttgttgggcttcagaacaaattgcatatcgttcagctgatctacgtca 25349809  T
Q  165 tatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatctttt 264  Q
     | |||||| |        || |||| |||||| |||||| || |||||||||||||||||||||| || ||||| | |||||||||||| || ||||||    
T  25349808 caagaatcaatgccaaa--aaggaaaatcctaatatgtagtaacatctttaggaacttccaaacatatcaaaatattccctaaaatattatcactctttt 25349711  T
Q  265 aggaataacaacacaactgattttgaacagatatg 299  Q
    |||||||| ||||||| ||||  ||||||||||||    
T  25349710 aggaataa-aacacaattgatgctgaacagatatg 25349677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 23477693 - 23477570
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatac-ggtgtaa 111  Q
    ||||||||||| ||||||| |||||||||||||| |||| |||||||||||  |||||||||||| | | ||||||||||||||||||| || |||  ||    
T  23477693 agactcaaaaccctaaaagataaactttttagaa-tgacggcttgaataatacattaggtcttgatggcttccttttatactgaagcaacacaggtcaaa 23477595  T
Q  112 taaatcttgttgggcttcagaacaaa 137  Q
    | | ||||||||||||||||||||||    
T  23477594 t-attcttgttgggcttcagaacaaa 23477570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 24986383 - 24986470
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  ||||||||||||| |||| |||||||| ||| ||||||||||||||||  |||| ||||||||||||    
T  24986383 agactcaaaaccctaaaaatctaaactttttagaa-tgacggcttgaatgatctattaggtcttgaagtctcccttatatactgaagca 24986470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 10339744 - 10339678
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatatt 253  Q
    |||||||| || ||||||||| |||||| ||||||||||||||| ||| | || | |||||||||||    
T  10339744 gaaagtccaaatatgtaggaacatctttcggaacttccaaacatatcctattattccctaaaatatt 10339678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 11085351 - 11085306
Alignment:
Q  90 atactgaagcaatacggtgtaataaatcttgttgggcttcagaacaa 136  Q
    ||||||||||||||||| || || |||||||||||||||||||||||    
T  11085351 atactgaagcaatacgg-gtcattaatcttgttgggcttcagaacaa 11085306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 40312915 - 40312870
Alignment:
Q  90 atactgaagcaatacggtgtaataaatcttgttgggcttcagaacaa 136  Q
    ||||||||||||||||| || |||||||||||||||||| |||||||    
T  40312915 atactgaagcaatacgg-gtcataaatcttgttgggctttagaacaa 40312870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 20200811 - 20200758
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||| |||||||| |||||||| ||||||||||| || || ||||||||||||    
T  20200811 atgacggcttgaatgatcaattatgtcttgaagtcttcgttatatactgaagca 20200758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 20841022 - 20840955
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagt 80  Q
    |||||||||||||||||| |  ||||||||||| | |||| |||| ||| |||||||||||||||||||    
T  20841022 agactcaaaacactaaaaatctaaactttttagta-tgacggcttaaatgatcaattaggtcttgaagt 20840955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 1626146 - 1626258
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||| | |||||||  | ||| ||||||||||||||| ||||| || | |||||| ||||     |||||| ||||||| | |||||||||||    
T  1626146 gaaagtcctaagaagtaggaacgtttttcggaacttccaaacatatccaattattccctaaactattgttgctcttttgggaataaaagcacaactgatt 1626245  T
Q  287 ttgaacagatatg 299  Q
    ||| | |||||||    
T  1626246 ttgtatagatatg 1626258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 13165815 - 13165882
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||||||||| | ||||  ||||||| | |||||| ||||||||||| ||||| |||||||||||||    
T  13165815 taaactttttagta-tgacgacttgaatgaacaattatgtcttgaagtcttccttatatactgaagcaa 13165882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 301
Target Start/End: Complemental strand, 17879400 - 17879139
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaat 138  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||  ||| ||| ||| ||||||||||||||||||    
T  17879400 ttttagaaatgacggcttgcataatcaattaggtcttgaagtcttccttttatactgaagcaatatgggataacaaaccttattgggcttcagaacaaat 17879301  T
Q  139 tacagatcattcatatgatcta-aaaatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaa 237  Q
    |  ||||| |||| |||| ||| |||| | |||||||        ||| ||||||| ||| |   ||||| |||||| |||||||||||| || |||||     
T  17879300 tggagatcgttcagatgaactacaaaacacgaatcag--aacaaataaggaaagtcataagaaaaaggaacatctttcggaacttccaaaaatatccaat 17879203  T
Q  238 taattcctaaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatgtg 301  Q
    || | |||||||||||     || ||| | ||||| | |||||||||||||| |||||||||||    
T  17879202 tattccctaaaatattgttgctcctttggaaataaaagcacaactgattttgtacagatatgtg 17879139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 17869648 - 17869531
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaat 138  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||  ||| ||| ||| ||||||||||||||||||    
T  17869648 ttttagaaatgacggcttgcataatcaattaggtcttgaagtcttccttttatactgaagcaatatgggataacaaaccttattgggcttcagaacaaat 17869549  T
Q  139 tacagatcattcatatga 156  Q
    |  ||||| |||| ||||    
T  17869548 tggagatcgttcagatga 17869531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 24542227 - 24542339
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    ||||||||||||| ||| ||| |||||||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||| || |||||| |||    
T  24542227 gaaagtcctaaaaagtaagaacatctttaggaacttacaaacagatccaaatgattcctaaaatattaccaatcttttaggaataataaaacaacttatt 24542326  T
Q  287 ttgaacagatatg 299  Q
    |||  ||||||||    
T  24542327 ttgtgcagatatg 24542339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 299
Target Start/End: Original strand, 11960897 - 11961155
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaat 138  Q
    ||||||||||||| |||||||||    || ||||||||||||| ||||| |||||| || |||||  |  |||| || |||||||||||||||||||||     
T  11960897 ttttagaaatgacggcttgaataccagatgaggtcttgaagtcttccttatatacttaaacaatataggctaattaaccttgttgggcttcagaacaaag 11960996  T
Q  139 tacagatcattcatatgatctaaa-aatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaa 237  Q
    ||  |||| ||||  ||||||| | |||| ||||||||        || ||||||||||| | |||| || |||||| ||||||||||||||| |||||     
T  11960997 ta--gatcgttcaactgatctacataatacgaatcagtaacaaaa-aaggaaagtcctaagaagtagaaacatctttcggaacttccaaacatatccaat 11961093  T
Q  238 taattcctaaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatg 299  Q
    || | || ||||||||  || || ||||||||||| | ||||||| ||| || |||||||||    
T  11961094 tattccccaaaatattgtcactcctttaggaataaaagcacaactaattatgtacagatatg 11961155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 15930603 - 15930516
Alignment:
Q  15 gactcaaaacactaaaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaata 103  Q
    |||||||||| |||||  || ||||||||||| |||| ||||||||  ||||||||||||||||||| || ||||||||||||||||||    
T  15930603 gactcaaaaccctaaagctatactttttagaa-tgacggcttgaattctcaattaggtcttgaagtcttcgttttatactgaagcaata 15930516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 23882455 - 23882332
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaat 112  Q
    ||||||||||| ||||||  |||||||| || || |||| |||||||| |||||||||||||||||| | ||||| ||||||||||||||| ||  ||||    
T  23882455 agactcaaaaccctaaaatctaaactttatataa-tgacggcttgaatgatcaattaggtcttgaagccttccttatatactgaagcaatatgggctaat 23882357  T
Q  113 aaatcttgttgggcttcagaacaaa 137  Q
    |||   ||||||| |||||||||||    
T  23882356 aaacgatgttgggtttcagaacaaa 23882332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 17855629 - 17855683
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||||||  ||||||||||||||||| ||||| ||||||||||||    
T  17855629 aatgacagcttgaataaagaattaggtcttgaagtcttccttatatactgaagca 17855683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 19894395 - 19894341
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  19894395 aatgacagcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 19894341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 14259317 - 14259404
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  |||||||||| | |||||  ||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  14259317 agactcaaaaccctaaaaatctaaacttttta-atatgacgacttgaatgatcaattaggtcttgaagtcttccttatatactgaagca 14259404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 19171817 - 19171903
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagc 99  Q
    ||||||||||| |||||| |  ||||||||||| | |||| |||||||| ||||||||||||||| |||| ||||| |||||||||||    
T  19171817 agactcaaaaccctaaaaatctaaactttttagta-tgacggcttgaatgatcaattaggtcttggagtcttccttatatactgaagc 19171903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 24564142 - 24564206
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaata 103  Q
    ||||||||||||| |||||||| |  |||||| |||||||||| ||||| |||||||||||||||    
T  24564142 ttttagaaatgacggcttgaatcaataattagatcttgaagtcttccttatatactgaagcaata 24564206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 29253439 - 29253353
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||  ||||||| |||||||||||||| |||  ||||| || |||||||||||||||  ||| ||||||||||||||||||    
T  29253439 agactcaaaatcctaaaagctaaactttttagaa-tgatggcttggatgatcaattaggtcttgttgtcttccttttatactgaagca 29253353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 33666232 - 33666279
Alignment:
Q  53 gcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  33666232 gcttgaataaacaattaggtcttgaagtcttccttatatactgaagca 33666279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 23882284 - 23882218
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttcc-aaacatgtccaaataattcctaaaatat 252  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||  | |||||| ||||||||||||    
T  23882284 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacagcttcaaatatttcctaaaatat 23882218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 15930435 - 15930394
Alignment:
Q  186 agaaagtcctaaaatgtaggaaaatctttaggaacttccaaa 227  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  15930435 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 15930394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 19077544 - 19077631
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  ||||||||||| | | || |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  19077544 agactcaaaaccctaaaaatctaaactttttagtatt-acggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 19077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 25969775 - 25969828
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||| |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  25969775 atgacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 25969828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 25974215 - 25974268
Alignment:
Q  47 atgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||| |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  25974215 atgacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 25974268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 8465395 - 8465343
Alignment:
Q  48 tgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||| |||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  8465395 tgacggcttgaatgatcaattaggtcttgaagtctcccttatatactgaagca 8465343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 24564288 - 24564400
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    |||||||||| || |||||||  | ||||||||||||||| ||| |||||||| | |||||||||||   | || |||||||| || | ||| |||||||    
T  24564288 gaaagtcctagaaggtaggaacttttttaggaacttccaagcatatccaaatattccctaaaatattgttactcctttaggaagaaaaccaccactgatt 24564387  T
Q  287 ttgaacagatatg 299  Q
     | ||||||||||    
T  24564388 cttaacagatatg 24564400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 17527623 - 17527557
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||| | |||| |||||||| | |||||||||||| ||||| ||||| ||||||||||||    
T  17527623 taaactttttagta-tgacggcttgaatgagcaattaggtcttaaagtcttccttatatactgaagca 17527557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 26965280 - 26965242
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaata 103  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  26965280 aattaggtcttgaagtcttccttatatactgaagcaata 26965242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 16309065 - 16308993
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    ||||||||||||||||| |  || |||||||||||||||||| | | || |  ||| ||||||||||||||||    
T  16309065 aattaggtcttgaagtcttgtttatatactgaagcaatacggggcagtagactttgatgggcttcagaacaaa 16308993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 17235016 - 17235083
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    |||||||||||| | |||| |||||||| | |||||||||||||||||| || || |||||| ||||||    
T  17235016 taaactttttagta-tgacggcttgaatgaacaattaggtcttgaagtcttctttatatactaaagcaa 17235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 536 - 648
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatattaccaatcttttaggaataacaacacaactgatt 286  Q
    |||||||||||||  |||||| |||||||||||||||||||||  ||||||| | |||||||||||| |||||||| ||||||||| || ||||||||||    
T  536 gaaagtcctaaaaaataggaacatctttaggaacttccaaacagatccaaatgactcctaaaatattgccaatcttataggaataataaaacaactgatt 635  T
Q  287 ttgaacagatatg 299  Q
     |  |||||||||    
T  636 ctatacagatatg 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 302
Target Start/End: Complemental strand, 13941739 - 13941479
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaat 138  Q
    ||||| ||||||| |||||||||   ||||||||||||||||| ||||||||||| ||||||||| |   |||| || |||||||||||||||||||||     
T  13941739 ttttataaatgacggcttgaatacctaattaggtcttgaagtcttccttttatacggaagcaatatgagctaattaaccttgttgggcttcagaacaaag 13941640  T
Q  139 tacagatcattcatatgatcta-aaaatatgaatcagtnnnnnnntaaagaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaa 237  Q
    |  ||||| ||||  ||||||| | |||| ||||||||       ||| |||||| |||| | ||||||| |||||| ||||||||||||| | |||||     
T  13941639 t--agatcgttcagctgatctacataatacgaatcagt-aacaaataaggaaagt-ctaagaagtaggaacatctttcggaacttccaaacttatccaag 13941544  T
Q  238 taattcctaaaatattaccaatcttttaggaataacaacacaactgattttgaacagatatgtgc 302  Q
    || | ||| |||||||    ||  ||||||||||| | |||||||||||||| ||||||||||||    
T  13941543 tattccctcaaatattgttgattctttaggaataaaagcacaactgattttgtacagatatgtgc 13941479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 20714473 - 20714411
Alignment:
Q  39 ttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa 101  Q
    ||||||||||||| | ||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  20714473 ttttagaaatgacggtttgaatattcaattaggtcttgaagtcttccttatatactgaagcaa 20714411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 22404488 - 22404434
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  22404488 aatgacggcttgaataatcaattaggtcttgaagtcttccttatatactgaagca 22404434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 38405762 - 38405849
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||||||| |  ||||||||||||| |||  ||||||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  38405762 agactcaaaacactaaaaatctaaactttttagaa-tgaaggcttgaatactcaattaagtcttgaagtcttccttatatactgaagca 38405849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 18221511 - 18221597
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| ||||||| |||||||||||||| || | |||||||| |||||||||||||||  ||| |||||||||| |||||||    
T  18221511 agactcaaaaccctaaaagctaaactttttagaa-tgtccgcttgaatgatcaattaggtcttgttgtcttccttttataatgaagca 18221597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 22082447 - 22082361
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||  |||||||||| ||||||||  |||| |||||| |||||    
T  22082447 agactcaaaactctaaaagctaaactttttagaa-tgacagcttgaatgctcaattaggttttgaagtctcccttatatactaaagca 22082361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 23758015 - 23757928
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  ||||||||||| | ||||||||||||| ||||||||||||||| |||| || || ||||||||||||    
T  23758015 agactcaaaaccctaaaaatctaaactttttagta-tgacagcttgaatgatcaattaggtcttgtagtcttctttatatactgaagca 23757928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 23823471 - 23823384
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  ||||||||||| | ||||||||||||| ||||||||||||||| |||| || || ||||||||||||    
T  23823471 agactcaaaaccctaaaaatctaaactttttagta-tgacagcttgaatgatcaattaggtcttgtagtcttctttatatactgaagca 23823384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 9422252 - 9422187
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||||| |||| |||||||||| ||||||||| |||||||| ||||| ||||||||||||    
T  9422252 taaactttttagaa-tgacggcttgaataa-caattaggtattgaagtcttccttatatactgaagca 9422187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 23624449 - 23624488
Alignment:
Q  188 aaagtcctaaaatgtaggaaaatctttaggaacttccaaa 227  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  23624449 aaagtcctaaaatgtaggaacatctttaggaacttccaaa 23624488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 24190283 - 24190349
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||||| | |||| |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  24190283 taaactttttagta-tgacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 24190349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 22251767 - 22251713
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  22251767 aatgacggcttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 22251713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26037181 - 26037267
Alignment:
Q  15 gactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||||| |||||| |  ||||||||||||| |||| ||||||||| |  ||||||||||||||||  |||| ||||||||||||    
T  26037181 gactcaaaaccctaaaaatctaaactttttagaa-tgacggcttgaatagttcattaggtcttgaagtctcccttatatactgaagca 26037267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 13338989 - 13339111
Alignment:
Q  14 agactcaaaacactaaaagtaaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaata 113  Q
    ||||||||||| |||||| ||  ||||| |||||| ||  |||||||||  ||||||||||||| ||| | ||||||| ||||| ||||||||   ||      
T  13338989 agactcaaaaccctaaaactagcctttt-agaaataacgtcttgaataactaattaggtcttgatgtcttgcttttatgctgaaacaatacgggtcaaat 13339087  T
Q  114 aatcttgttgggcttcagaacaaa 137  Q
    ||| |||||||||||||| |||||    
T  13339088 aattttgttgggcttcagcacaaa 13339111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 20714328 - 20714262
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatatt 253  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||| ||||| || | ||| |||||||    
T  20714328 gaaagtcctaagaagtaggaacatctttcggaacttccaaacatatccaattattcccttaaatatt 20714262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 26328970 - 26328886
Alignment:
Q  16 actcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||| ||||||| |||||| ||||||| |||| ||||||||  |  |||||||||||| ||| ||||||||||| ||||||    
T  26328970 actcaaaaccctaaaagctaaactctttagaa-tgacggcttgaatggttcattaggtcttgatgtcttccttttataccgaagca 26328886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 30605429 - 30605326
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaa-tacggtgtaataaatcttgttgggcttcag 131  Q
    |||||||||||||| | || ||||||||| |  ||||||||||||||||  |||| ||||||||||||| |   ||  |||||| |||||||||||||||    
T  30605429 taaactttttagaatt-acggcttgaatagttcattaggtcttgaagtctcccttatatactgaagcaactcaagtcaaataaa-cttgttgggcttcag 30605332  T
Q  132 aacaaa 137  Q
    ||||||    
T  30605331 aacaaa 30605326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 18221682 - 18221714
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaa 219  Q
    ||||||||||||||||||||| |||||||||||    
T  18221682 gaaagtcctaaaatgtaggaacatctttaggaa 18221714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 23624297 - 23624363
Alignment:
Q  33 taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttt-tatactgaagca 100  Q
    |||||||||||||| |||| ||||||||| |  ||||||||||||||| ||||||| ||||||||||||    
T  23624297 taaactttttagaa-tgacggcttgaatagttcattaggtcttgaagt-ctcctttatatactgaagca 23624363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 21530785 - 21530906
Alignment:
Q  16 actcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataa 114  Q
    ||||||||| ||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||   ||  |    
T  21530785 actcaaaaccctaaaaactaaactttttagaa-tgacagcttgaatattcaattaggtcttgaagtcttccttttatactgaagaaatatgggtcaaata 21530883  T
Q  115 atcttgttgggcttcagaacaaa 137  Q
     ||||||||||||||||| ||||    
T  21530884 gtcttgttgggcttcagagcaaa 21530906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 19445002 - 19445094
Alignment:
Q  14 agactcaaaacactaaaag-taaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacgg 106  Q
    ||||||||||| ||||||  |||||||||||||| |||| ||| |||||   ||||||||||||||||| ||||||||||||||||||||||||    
T  19445002 agactcaaaaccctaaaaactaaactttttagaa-tgacggctagaatagataattaggtcttgaagtcttccttttatactgaagcaatacgg 19445094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 15328769 - 15328850
Alignment:
Q  56 tgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||   |||   ||  | ||||||||||||||||||||||    
T  15328769 tgaataatcaattaggtcttgatgtcttccttttatactgaagcagctcgggtcaaatattcttgttgggcttcagaacaaa 15328850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 12910925 - 12910979
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||||| ||||||||||||||| || ||||| ||||||||||||    
T  12910925 aatgacggcttgaataaacaattaggtcttgaaatcttccttatatactgaagca 12910979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 22611323 - 22611377
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||  | |||||||||||||||||| ||||| ||||||||||||    
T  22611323 aatgacggcttgaaggaacaattaggtcttgaagtcttccttatatactgaagca 22611377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 24789886 - 24789832
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||| | |||||||||||||||||| | ||| ||||||||||||    
T  24789886 aatgacggcttgaatgaacaattaggtcttgaagtcttacttatatactgaagca 24789832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 21249782 - 21249717
Alignment:
Q  188 aaagtcctaaaatgtaggaaaatctttaggaacttccaaacatgtccaaataattcctaaaatatt 253  Q
    |||||||||| | |||| || |||||| ||||||||||||||| ||||| || | |||||||||||    
T  21249782 aaagtcctaagaagtagaaacatctttcggaacttccaaacatatccaattattccctaaaatatt 21249717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 21249903 - 21249831
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaacaaa 137  Q
    ||||||||||||||||| |||||  ||| ||||| |||| ||  |||| || ||||||||| |||||||||||    
T  21249903 aattaggtcttgaagtcttccttacatattgaagaaatatgggctaattaaccttgttgggtttcagaacaaa 21249831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 26828 - 26930
Alignment:
Q  34 aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataaatcttgttgggcttcagaa 133  Q
    ||||||||||||| |||  ||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||   ||  | ||||| ||||||||||||    
T  26828 aaactttttagaa-tgatggcttgaataatcaattaggtcttgatgtcttccttttatactgaagcagcacgggtcaaatattcttgctgggcttcagaa 26926  T
Q  134 caaa 137  Q
    ||||    
T  26927 caaa 26930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 26978 - 27044
Alignment:
Q  187 gaaagtcctaaaatgtaggaaaatctttaggaacttcc-aaacatgtccaaataattcctaaaatat 252  Q
    |||||||||||||| |||||| |||||||||||| ||| |||||  | |||||| ||||||||||||    
T  26978 gaaagtcctaaaatataggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatat 27044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 2094 - 2040
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  2094 aatgacggcttgaataatcaattaggtcttgaagtcttccttatatactgaagca 2040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 48112 - 48065
Alignment:
Q  53 gcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  48112 gcttgaataatcaattaggtcttgaagtcttccttatatactgaagca 48065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 357022 - 356968
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| |||||||||||||||||||| |||||||| ||||| |||||| |||||    
T  357022 aatgacggcttgaataatcaattaggttttgaagtcttccttatatactaaagca 356968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 7297 - 7210
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| |||||| |  |||||| |||||| || | |||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  7297 agactcaaaaccctaaaaatctaaacttattagaa-tggcggcttgaatgatcaattaggtcttgaagtctcccttatatactgaagca 7210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 17884 - 17797
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| ||||||||  ||||||||||||| ||||  ||||||| |||| || ||||||||||||  |||| ||||||||||||    
T  17884 agactcaaaaccctaaaagtctaaactttttagaa-tgacgacttgaatgatcactttggtcttgaagtctcccttatatactgaagca 17797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 27278 - 27191
Alignment:
Q  14 agactcaaaacactaaaagt--aaactttttagaaatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||||||| ||||||||  ||||||||||||| ||||  ||||||| |||| || ||||||||||||  |||| ||||||||||||    
T  27278 agactcaaaaccctaaaagtctaaactttttagaa-tgacgacttgaatgatcactttggtcttgaagtctcccttatatactgaagca 27191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 8299 - 8252
Alignment:
Q  53 gcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||||| ||||||||||||||||||||  |||| ||||||||||||    
T  8299 gcttgaatgatcaattaggtcttgaagtctcccttatatactgaagca 8252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 25396 - 25350
Alignment:
Q  54 cttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  25396 cttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 25350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 109986 - 109932
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    |||||| | |||||| | |||||||||||||||||| ||||| ||||||||||||    
T  109986 aatgacggtttgaatgaacaattaggtcttgaagtcttccttatatactgaagca 109932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 12229 - 12183
Alignment:
Q  54 cttgaataatcaattaggtcttgaagtcctccttttatactgaagca 100  Q
    ||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  12229 cttgaatgagcaattaggtcttgaagtcttccttatatactgaagca 12183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 37024 - 37065
Alignment:
Q  46 aatgacagcttgaataatcaattaggtcttgaagtcctcctt 87  Q
    ||||||||||||||| | |||||||||||||||||| |||||    
T  37024 aatgacagcttgaatgaacaattaggtcttgaagtcttcctt 37065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 52638 - 52570
Alignment:
Q  65 aattaggtcttgaagtcctccttttatactgaagcaatacggtgtaataa-atcttgttgggcttcagaa 133  Q
    |||||||||||| |||| |   |||||||||||||||||||| || |||| |||||||||||||||||||    
T  52638 aattaggtcttgtagtcttgtatttatactgaagcaatacgg-gttataacatcttgttgggcttcagaa 52570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University