View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_high_44 (Length: 339)
Name: NF2495_high_44
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 55506700 - 55506982
Alignment:
| Q |
1 |
ttgaaagaaggttagatttttaatttcttttcctagacctagttcatgttaaaagtcatcttaaatgtacattcaaaatcaaagacgcaaacattttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55506700 |
ttgaaagaaggttagatttttaatttcgactccta------gttcatgttaaaagtcatcttaaatgtacattcaaaatcaaagacacaaacattttgca |
55506793 |
T |
|
| Q |
101 |
cccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttac---ctactctatgtatacgaccaacgc-nnnnnnnnnnnnnnnng |
196 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
55506794 |
cccaattcttatatttagaaaaaacaaaaattaaaacaacatgtctcgtgtttacctactactctatgtatccgaccaacgctttttgttttattttttg |
55506893 |
T |
|
| Q |
197 |
catgtttgttggttagtaaagtaaaaaccattattgcttcatgtgcttgaaggcaatacaaagaaacgaggatcatgtttctctcaaat |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55506894 |
catgtttgttggttagtaaagtaaaaaccattattgcttcatgtgcttgaaggcaatacaaagaaacgaggatcatgtttctctcaaat |
55506982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 111 - 305
Target Start/End: Complemental strand, 43633245 - 43633045
Alignment:
| Q |
111 |
atatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgaccaacgcnnnnnnnnnnnnnnnn-gcatgtttgttggt |
209 |
Q |
| |
|
||||||| |||| | ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
43633245 |
atatttataaaaggtaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaacgcttttgttttatttttttgcatgtttattggt |
43633146 |
T |
|
| Q |
210 |
tagtaaa--gtaaaaaccattattgcttcatgtg---cttgaaggcaatacaaagaaacgaggatcatgtttctctcaaattagctaagtaatcataatc |
304 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633145 |
tagtaaaaagtaaaaaccattattgcttcatgtgttacttgaaggcaatgcaaagaaacgacgatcatgtttctctcaaattagctaagtaatcataatc |
43633046 |
T |
|
| Q |
305 |
a |
305 |
Q |
| |
|
| |
|
|
| T |
43633045 |
a |
43633045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 43996919 - 43997128
Alignment:
| Q |
94 |
ttttgcacccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgacca--acgcnnnnnnnnnnnn |
191 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||| || |
|
|
| T |
43996919 |
tttttcacccaattcttatatttataaaaggcaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaatactattgttttatttt |
43997018 |
T |
|
| Q |
192 |
nnnngcatgtttgttggttagtaaagtaaaaaccattattgcttcatgtg---cttgaaggcaatacaaagaaacgaggatcatgtttctctcaaattag |
288 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
43997019 |
ttttgcatgtttattggttagtaaagtaaaaaccattattgcttcatgtgttacttgaaggcaatgcaa-------acgatcatgtttctctcaaattag |
43997111 |
T |
|
| Q |
289 |
ctaagtaatcataatca |
305 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43997112 |
ctaagtaatcataatca |
43997128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University