View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_46 (Length: 328)
Name: NF2495_high_46
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 22278612 - 22278309
Alignment:
| Q |
9 |
gattatactattcaatttcgaggaagttaaagtggagatctgggactgttttaagagttctggtctggatggtataaattttagttttttcaaagacttt |
108 |
Q |
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| T |
22278612 |
gattaaactattcaatttcgaggaagttaaagtggagatctgggactgttttaagagttctggtccggatggtataaattttagttttttcaaagacttt |
22278513 |
T |
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| Q |
109 |
tggctagaaattaaagatgaaattgtgcgttgaagtatgtaccatcatctcttcatgtttatgctatttacttcttcaaagcctcttcaggtatcatttc |
208 |
Q |
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| T |
22278512 |
tggctagaaataaaagatgaaattgtgcgttgaagtatgtaccatcatcttttcatgtttatgctatctacttcttcaaagcctcttcaggtatcatttc |
22278413 |
T |
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| Q |
209 |
cgctatcaattctattttatgttgtcttttttggggtgggggtgaggaatataggtaaactttctgggtttattcagattatgtttgtttgagtaaggag |
308 |
Q |
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| T |
22278412 |
ctctatcgattctattttatgttgtcttttttggggtgggggtgaggaatataggtaaattttctaggtttattcagattatgtttgtttgagtaaggag |
22278313 |
T |
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| Q |
309 |
gaag |
312 |
Q |
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|||| |
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| T |
22278312 |
gaag |
22278309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 21089887 - 21089945
Alignment:
| Q |
156 |
tctcttcatgtttatgctatttacttcttcaaagcctcttcaggtatcatttccgctat |
214 |
Q |
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| T |
21089887 |
tctcttcctatttatgctatttccttcttcaaattcccttcaggtatcatttcctctat |
21089945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 17829525 - 17829460
Alignment:
| Q |
162 |
catgtttatgctatttacttcttcaaagcctcttcaggtatcatttccgctatcaattctatttta |
227 |
Q |
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| T |
17829525 |
catgattatgctattttcttcttcaaagctccctcaggtatcatctcctctatcgattctttttta |
17829460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 380758 - 380706
Alignment:
| Q |
156 |
tctcttcatgtttatgctatttacttcttcaaagcctcttcaggtatcatttc |
208 |
Q |
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| T |
380758 |
tctctgcatgtctatgctctttccttcttcaaagcttcatcaggtatcatttc |
380706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 41352565 - 41352634
Alignment:
| Q |
179 |
cttcttcaaagcctcttcaggtatcatttccgctatcaattctattttatgttgtcttttttggggtggg |
248 |
Q |
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||||||||||||| | |||| |||||||||| |||| |||||||||||||| || | |||| ||||||| |
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| T |
41352565 |
cttcttcaaagccccgtcagatatcatttcctctattgattctattttatgtcgtttcttttagggtggg |
41352634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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