View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_55 (Length: 288)
Name: NF2495_high_55
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 15835920 - 15835648
Alignment:
| Q |
1 |
agaacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835920 |
agaacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagact |
15835821 |
T |
|
| Q |
101 |
caaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835820 |
caaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctac |
15835721 |
T |
|
| Q |
201 |
gctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835720 |
gctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
15835648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 19796682 - 19796410
Alignment:
| Q |
1 |
agaacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagact |
100 |
Q |
| |
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||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||| || |||||||| |
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| T |
19796682 |
agaacatgtcaccaacgtttctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctgatactccttctgaaacactcgttgagagact |
19796583 |
T |
|
| Q |
101 |
caaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctac |
200 |
Q |
| |
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|||||| || |||||||| ||||| |||||| |||||||||||||||||||||||||||| || || |||||||| |||||||| ||||||||||||||| |
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| T |
19796582 |
caaacttgcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctac |
19796483 |
T |
|
| Q |
201 |
gctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
273 |
Q |
| |
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|| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
19796482 |
gccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttg |
19796410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 47713732 - 47713490
Alignment:
| Q |
3 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactca |
102 |
Q |
| |
|
||||||||||| |||| |||| | || || |||||||| ||||| ||||||||||||||||||||||| |||||| ||||||| || || |||| |
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| T |
47713732 |
aacatgtcaccaacatatctcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttc |
47713633 |
T |
|
| Q |
103 |
aactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgc |
202 |
Q |
| |
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|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| || ||||| |||||||| |
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| T |
47713632 |
aattagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgc |
47713533 |
T |
|
| Q |
203 |
tgctgctctctggttgcatgaaaatcaccctaaaaccctagct |
245 |
Q |
| |
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|||||||| ||||| || | | |||||||||||||||||| |
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| T |
47713532 |
cgctgctctttggtttcaccactaccaccctaaaaccctagct |
47713490 |
T |
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