View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_high_59 (Length: 282)
Name: NF2495_high_59
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_59 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 16908462 - 16908730
Alignment:
| Q |
1 |
ttcctatatcctcccccttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaa |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
16908462 |
ttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgctccaactgccacaccaatcttcaacacatcaaccaa |
16908561 |
T |
|
| Q |
101 |
caatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908562 |
caatctctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtc |
16908661 |
T |
|
| Q |
201 |
accacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcct |
269 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16908662 |
acaacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcct |
16908730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 14870197 - 14869929
Alignment:
| Q |
1 |
ttcctatatcctcccccttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaa |
100 |
Q |
| |
|
||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
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| T |
14870197 |
ttcctatctcatccctcttaaccacatcatccccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaa |
14870098 |
T |
|
| Q |
101 |
caatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
14870097 |
caatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttacactttccataatagtgttccagccacagtgagtc |
14869998 |
T |
|
| Q |
201 |
accacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcct |
269 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
14869997 |
accactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagcct |
14869929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 5994740 - 5994977
Alignment:
| Q |
32 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaat |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || || || | |||||||| || ||||||||||| | | | ||||||||||||| |||||||||||| |
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|
| T |
5994740 |
cccaaactcattccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaat |
5994839 |
T |
|
| Q |
132 |
aatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagta |
231 |
Q |
| |
|
|| ||||| || | |||||| || |||| |||||||| | || ||||||||| ||||||||| |||| | |||||| |||| || ||| |||| |
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| T |
5994840 |
aaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaaccctccaattgcatgattctcaagta |
5994939 |
T |
|
| Q |
232 |
tcagaagctgtggtgcccaaccccatatcaaatagcct |
269 |
Q |
| |
|
||| ||||||||||||||| ||||| |||||||||||| |
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|
| T |
5994940 |
tcaaaagctgtggtgcccatccccaaatcaaatagcct |
5994977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 17572351 - 17572461
Alignment:
| Q |
32 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaat |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | || ||||| | ||||||||||| | ||| ||||||| ||||| ||||||||||| |
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|
| T |
17572351 |
cccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacacatcaacaaccaacttctcattaaaaaaatgttcagcaaac |
17572450 |
T |
|
| Q |
132 |
aatggccaagt |
142 |
Q |
| |
|
|| |||||||| |
|
|
| T |
17572451 |
aaaggccaagt |
17572461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 17620367 - 17620329
Alignment:
| Q |
32 |
cccaaactcattccaatttctccattcttttgcaccaac |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
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|
| T |
17620367 |
cccaaactcattccaatttctccattctttagccccaac |
17620329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 14709948 - 14710056
Alignment:
| Q |
32 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||| ||||| | |||||||||| || |||| ||||||| ||||| || |||||||| |
|
|
| T |
14709948 |
cccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
14710046 |
T |
|
| Q |
131 |
taatggccaa |
140 |
Q |
| |
|
|| |||||| |
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|
| T |
14710047 |
caaaggccaa |
14710056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 12613877 - 12613769
Alignment:
| Q |
34 |
caaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataa |
133 |
Q |
| |
|
||||||||||||||||| |||||||| | || | || ||| ||||| || ||||| ||||||| |||| |||||| ||||| |||||||||||||| |
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|
| T |
12613877 |
caaactcattccaatttttccattctctaatccctagtgacaccccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataa |
12613778 |
T |
|
| Q |
134 |
tggccaagt |
142 |
Q |
| |
|
|||||||| |
|
|
| T |
12613777 |
aggccaagt |
12613769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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