View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_6 (Length: 542)
Name: NF2495_high_6
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Original strand, 48097154 - 48097663
Alignment:
| Q |
16 |
gtatagttaagtcatttcgttcataatcaacaaatacaaagtaactgatacattactgaaaatactagagttggggtgatataaggatgtcctagctatt |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||| || | ||| |||||||| ||||| |||||||||| |
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| T |
48097154 |
gtatagttaagtcatttcattcataatcaacaaatacaaagtagttggtacattattgaaaatacgagggctggagtgatatatggatgccctagctatt |
48097253 |
T |
|
| Q |
116 |
attctatgagcaaactatatttgttggcctccgaacatgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcacca |
215 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48097254 |
---ctatgagcaaaacctatttggtggcctccgaacatgcaacactacaaagtctggtctatttagtaagagatttttacattgtaaaataagatcacca |
48097350 |
T |
|
| Q |
216 |
aattcatttagaggaccattggtggtggcaagagcaacatatagaatttcacgattagtttcaaacaaaacaacattcatttagtttgatatgaccactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48097351 |
aattcatttagaggaccattggtggtggcaagagcaacatatagaaattcacgattagtttcaaacaaaacaacattcattcagtttgatatgaccactt |
48097450 |
T |
|
| Q |
316 |
tgatagct---cccaagtctatggtttcagcttctagaagagtgacaaagaagtagaaatattat-atttgccaagaatgtgcaccctgaagattctcta |
411 |
Q |
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| T |
48097451 |
tgatagcttcccgcaaatctatggttttagcttctagaagagtgacaaagaagtagaaatattatgatttgccaagaatgtgcatcccgaagattctcta |
48097550 |
T |
|
| Q |
412 |
aagcacatgttgtaccccatatatagaattattgttgaaagaggttgtctccatgttacatttgatcatgctcagtgatgggttgctccgaaaatcaaag |
511 |
Q |
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| T |
48097551 |
aagcacatgttgtacctcatatatagaattattgttgaaagaggttgtctccatgttacatttgatcgtgctcagtgatggtttgctccgaaaatcaaag |
48097650 |
T |
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| Q |
512 |
gtatccaacatcg |
524 |
Q |
| |
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|| |||||||||| |
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| T |
48097651 |
gtgtccaacatcg |
48097663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 27466822 - 27466726
Alignment:
| Q |
152 |
atgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcaccaaattcatttagaggaccattggtggtggcaaga |
248 |
Q |
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|||| ||||||||||||| | | |||| | ||||||| || ||||||| |||||||| ||||||| ||||| |||||| ||||||||||||||||| |
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| T |
27466822 |
atgcgacactacaaagtcgggtttattaagtaagagacttctacattgagaaataagaacaccaaactcattaagaggaacattggtggtggcaaga |
27466726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 5691701 - 5691653
Alignment:
| Q |
272 |
agtttcaaacaaaacaacattcatttagtttgatatgaccactttgata |
320 |
Q |
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| T |
5691701 |
agtttcaaacaaaacaacgtacattccgtttgatatggccactttgata |
5691653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 32045356 - 32045413
Alignment:
| Q |
203 |
aataagatcaccaaattcatttagaggaccattggtggtggcaagagcaacatataga |
260 |
Q |
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| T |
32045356 |
aataaggtcaccaaattcattaagaggaacattggtggtggcaagagcatcatataga |
32045413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 44657413 - 44657314
Alignment:
| Q |
128 |
aactatatttgttggcctccgaacatgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcaccaaattcatttaga |
227 |
Q |
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| T |
44657413 |
aactatattagtttacctccaaacatgcgatactacaaagtcggatctattaagtaagagacttttacattgaaagacgagatctccaaattcatttaga |
44657314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 40851918 - 40852016
Alignment:
| Q |
132 |
atatttgttggcctccgaacatgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcaccaaattcatttagagga |
230 |
Q |
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| T |
40851918 |
atattagtttgcctacgaacatgagacactacatagtcaggtctattaaataagagacttctacattgaaagacaaggtctccaaattcatttagagga |
40852016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 27950168 - 27950215
Alignment:
| Q |
274 |
tttcaaacaaaacaacattcatttagtttgatatgaccactttgatag |
321 |
Q |
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|||||||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
27950168 |
tttcaaacaaaacaacatgcatttcatttgatatgaccgctttgatag |
27950215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 28000439 - 28000483
Alignment:
| Q |
272 |
agtttcaaacaaaacaacattcatttagtttgatatgaccacttt |
316 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
28000439 |
agtttcaaacaaaacaacatgcattccatttgatatgaccacttt |
28000483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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