View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_60 (Length: 280)
Name: NF2495_high_60
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_60 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 48407807 - 48407974
Alignment:
| Q |
109 |
ccgagtactcaccattattttctttcgtccacacaagattgtcctcgatcacagaatgatacatagacgtattcattatgtttatactggaggcagtttc |
208 |
Q |
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| T |
48407807 |
ccgagtactcaccattattttctttcgtcca----agattgtcctcggtcacagaatgatacatagacatattcattatgtttacactggaggcagtttc |
48407902 |
T |
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| Q |
209 |
atgataaaaatcgaactaatgaatgggacattccaagctttatactcatgaatcatacaatctgctactttt |
280 |
Q |
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| T |
48407903 |
atgataaaaatcgaactaatgaatgggacattccaagctttatactcatgaatcatacaatctgctactttt |
48407974 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 5634204 - 5634114
Alignment:
| Q |
55 |
taaaatgatttatatcaagcaaatcctgcatacacaacttataagcactacaaaccgagtactcaccattattttctttcgtccacacaag |
145 |
Q |
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| T |
5634204 |
taaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaag |
5634114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 11568481 - 11568571
Alignment:
| Q |
55 |
taaaatgatttatatcaagcaaatcctgcatacacaacttataagcactacaaaccgagtactcaccattattttctttcgtccacacaag |
145 |
Q |
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| T |
11568481 |
taaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaag |
11568571 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 19111271 - 19111361
Alignment:
| Q |
55 |
taaaatgatttatatcaagcaaatcctgcatacacaacttataagcactacaaaccgagtactcaccattattttctttcgtccacacaag |
145 |
Q |
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| T |
19111271 |
taaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaag |
19111361 |
T |
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