View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_64 (Length: 274)
Name: NF2495_high_64
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 34261004 - 34260750
Alignment:
| Q |
9 |
attttcacaagtagctgaaaacgacattcccccatccctagagaaagcttctgcaagcttcaagaaattgaggaaagaaaaagataacacataaactaca |
108 |
Q |
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| T |
34261004 |
attttcacaagtagctgaaaacgacattcccccatccctagagaaagcttctgcaagcttcaagaaattgagggaagaaaaagataacacataaactaca |
34260905 |
T |
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| Q |
109 |
gctacttatatataatccttcaaacattggcacaatgattgtaataaataactgttttctagtgagcaaataaatttattttgaggtaaggtttccataa |
208 |
Q |
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| T |
34260904 |
gctacttatatataatccttcaaacattggcacaatgattgtaataaataactgttttctagtgagcaaataaatttattttgaggtaaggtttccataa |
34260805 |
T |
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| Q |
209 |
aaattgtcagcttatggttggcccgaataacctattcttatagcttggtgagaat |
263 |
Q |
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| T |
34260804 |
aaattgtcagcttatggttgtgccgaataacctattcttatagcttggtgagaat |
34260750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 34251084 - 34250866
Alignment:
| Q |
9 |
attttcacaagtagctgaaaacgacattcccccatccctagagaaagcttctgcaagcttcaagaaattgaggaaagaaaaagataacacataaactaca |
108 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |
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| T |
34251084 |
attttcacaagtagccgaaaacgacattcc---atccctagagaaagcttctgcaagcttcaagaaattgagggggaaaaaag-taacacataaacgaca |
34250989 |
T |
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| Q |
109 |
gctacttatatataatccttcaaacattggcacaatgattgtaataaataact----gttttctagtgagcaaataaatttattttgaggtaaggtttcc |
204 |
Q |
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|||||||||||||||||| |||||| ||||| | |||||||||||||||| | || ||||||| | ||||||||| |||||||| ||||||||| |
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| T |
34250988 |
actacttatatataatcctccaaacactggcata-tgattgtaataaataaataaatgtcttctagtaggaaaataaattcattttgagaaaaggtttcc |
34250890 |
T |
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| Q |
205 |
ataaaaattgtcagcttatggttg |
228 |
Q |
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|| ||||||||||| |||||||| |
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| T |
34250889 |
ttacaaattgtcagcatatggttg |
34250866 |
T |
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