View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_high_66 (Length: 269)
Name: NF2495_high_66
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_66 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 55506458 - 55506686
Alignment:
| Q |
32 |
cgaacaacaattcctaaatttagactttgttgatgttgtttgctttgtactcttgttcccttgccatggtttatccccctggattttcctgacaaggtct |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55506458 |
cgaacaacaattcctaaatttagactttgttgatgttgtttgctttgtactcttgttcccttgccatggtttatccccctggattttcctgacaaggtct |
55506557 |
T |
|
| Q |
132 |
tattgatgcaaatgttgagttcgcttcgttcgttttggtctatcgccgtctttctatcattcgctttattttcataatatctctagaatggcggctaagg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55506558 |
tattgatgcaaatgttgagttcgcttcgttcgcacaagt--------gtctttctatctttctctttattttcataatatctctagaatggcggctaagg |
55506649 |
T |
|
| Q |
232 |
ggtactaaacgtagttgtaatgtcttgattttgtcttt |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55506650 |
ggtact-aacgtagttgtaatgtcttgattttgtcttt |
55506686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 43996514 - 43996561
Alignment:
| Q |
114 |
attttcctgacaaggtcttattgatgcaaatgttgagttcgcttcgtt |
161 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
43996514 |
attttcctcacaaggtcttattgatgtgaatgttgagttctcttcgtt |
43996561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University