View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_70 (Length: 263)
Name: NF2495_high_70
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 4283122 - 4283309
Alignment:
| Q |
18 |
agtatgatggagggtagtacctagaaaaaatgcttgatttttgtattaaaaactactaggtggtagtaccttgaattttaataaaacatattattgtcga |
117 |
Q |
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| T |
4283122 |
agtatgatggagggtagtacctagaaaaaatgcttgatttttgtattaaaaactactaggtggtagtaccttgaattttaataaaacatattattgtcga |
4283221 |
T |
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| Q |
118 |
actcttattctttctcactcttgattaaattcgatataatcttctcccaaagtgatctttctgatgatgctgaaataactacttcaca |
205 |
Q |
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| T |
4283222 |
actcttattctttctcactcttgattaaattcgatataatcttctcccaaagtgatctttctgataatgctgaaataactacttcaca |
4283309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 4283307 - 4283340
Alignment:
| Q |
224 |
acaatatcttcatccatctcctcacctttgctac |
257 |
Q |
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| T |
4283307 |
acaatatcttcatccatctcctcacctttactac |
4283340 |
T |
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