View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_71 (Length: 262)
Name: NF2495_high_71
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 36608381 - 36608281
Alignment:
| Q |
146 |
cttgtagtatctaaggagaatgaatcagaggaaaattctcccatcaaacaagtggctctaacggtgccaacaacagatgacccttctctaccagttctaa |
245 |
Q |
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| T |
36608381 |
cttgtagtatctaagaagaatgattcagaggaaaattctcccatcaaacaagtggctctaacggtgccaacaacagatgacccttctctaccagttctaa |
36608282 |
T |
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| Q |
246 |
c |
246 |
Q |
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| T |
36608281 |
c |
36608281 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 36608519 - 36608433
Alignment:
| Q |
10 |
caatgataatatcacatcccctctccgtaagcaaacatgcatat--ccatctccttcattttcaaatttacaatttctttcattacc |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36608519 |
caatgataatatcacatcccctctccgtaagcaaacatgcatatatccatctccttcattttcaaatttacaatttctttcattacc |
36608433 |
T |
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