View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_76 (Length: 258)
Name: NF2495_high_76
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_76 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 8410513 - 8410384
Alignment:
| Q |
116 |
tgatcaatttatacttgttcaatcttagtcactagtttgtaaggttcgcttatttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcc |
215 |
Q |
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| T |
8410513 |
tgatcaatttatacttgttcaatcttagtcactagtttgtaaggtttgcttatttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcc |
8410414 |
T |
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| Q |
216 |
tgctgtggctaacaattggcctttgcattc |
245 |
Q |
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| T |
8410413 |
tgctgtggctaacaattggcctttgcattc |
8410384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 8361391 - 8361283
Alignment:
| Q |
62 |
ctatcttagtcagattcacacttataaagctttgtaaggttcacttattcataat-gatcaatttatacttgttcaatcttagtcactagtttgtaaggt |
160 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8361391 |
ctatcttagtaagattcacacttataa-gctttgtaaggttcaattatttataattgatcaatttatacttgttcaatcttagtcactagtatttaaggt |
8361293 |
T |
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| Q |
161 |
tcgcttattt |
170 |
Q |
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|||||||||| |
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| T |
8361292 |
tcgcttattt |
8361283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 8411442 - 8411357
Alignment:
| Q |
85 |
ataaagctttgtaaggttcacttattcataatgatcaatttatacttgttcaatcttagtcactagtttgtaaggttcgcttattt |
170 |
Q |
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| T |
8411442 |
ataaagctttgtaaggttcacttatttataatgatcaatttatacttgtttaatcttagtcactagtttttaaggttcacttattt |
8411357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 8361230 - 8361154
Alignment:
| Q |
169 |
ttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcattc |
245 |
Q |
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| T |
8361230 |
ttgtaaatgtttaaattttgctaaattagaaaaatgtcgttttggcctgctgtggctaacaattagcctttgcattc |
8361154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 8443248 - 8443179
Alignment:
| Q |
175 |
atgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcatt |
244 |
Q |
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| T |
8443248 |
atgtttaaattttcctaaattagaaaaatgttttttttccctgctgtgtctaacaattggcctttgcatt |
8443179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 8411332 - 8411297
Alignment:
| Q |
205 |
tctttttggcctgctgtggctaacaattggcctttg |
240 |
Q |
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| T |
8411332 |
tctttttggcctgctgtggctaacaattggcctttg |
8411297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 8348856 - 8348823
Alignment:
| Q |
20 |
cttatagctctgcatagagaaagcaaattgctgg |
53 |
Q |
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| T |
8348856 |
cttatagctctgcatagagaaagcaaattcctgg |
8348823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 68599 - 68671
Alignment:
| Q |
173 |
aaatgtttaaattttgctaaattagaaaaatgtc-tttttggcctgctgtggctaacaattggcctttgcatt |
244 |
Q |
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||||| ||||||||| |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||| |
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| T |
68599 |
aaatgcttaaattttcctaaattagaaaaatgtctttttttgccgactgtgtctaacaattggcctttgcatt |
68671 |
T |
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