View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_high_8 (Length: 526)
Name: NF2495_high_8
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Complemental strand, 50408715 - 50408197
Alignment:
| Q |
18 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408715 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
50408616 |
T |
|
| Q |
118 |
tgagacagcaaaatgttgcacgcaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
217 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408615 |
tgagacagcaaaatgttggacacaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
50408516 |
T |
|
| Q |
218 |
ttatcacatgattacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaa-ttgtttttcggttcctagtcat |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
50408515 |
ttatcacatgagtacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaatttttttttcggttcctagtcat |
50408416 |
T |
|
| Q |
317 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattgaaacaccaat----------caacattcaacattcaacccctatacatcaatg---- |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50408415 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattcaaacaccaatcaacattcaacaacattcaacattcaacccctatacatcaatgaatc |
50408316 |
T |
|
| Q |
403 |
aatcacatcactgt------------ttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctg |
490 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408315 |
aatcacatcactgtagcttttgcttcttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctg |
50408216 |
T |
|
| Q |
491 |
atcggtacctcttgtatat |
509 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50408215 |
atcggtacctcttgtatat |
50408197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 41637755 - 41637829
Alignment:
| Q |
435 |
gtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatat |
509 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41637755 |
gtcattttggaccaccgtcatctcatccgaagctccttcaacttctacctgctctgatcggtacctcttgtatat |
41637829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 41638695 - 41638647
Alignment:
| Q |
461 |
ccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatat |
509 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
41638695 |
ccgtagctccttcaacttctacctgctctgaccggtacctcttgtatat |
41638647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University