View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_80 (Length: 250)
Name: NF2495_high_80
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_80 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 49729351 - 49729595
Alignment:
| Q |
1 |
ttttccgcgttgactttggctaaacagtatgtaataaataaactaattttgcctcatagtttcttgaattag----ttaatttgtactttatgcagcaat |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49729351 |
ttttccgcgttgactttggctaaacagtatgtaataaataaactaattttgcctcatagtttcttgaattagttagttaatttgtactttatgcagcaat |
49729450 |
T |
|
| Q |
97 |
catgttcaagtctcaatatctttccttccaatacctaatcatcatcctcctcctctcaatactgttcattcacttctctcaagctgacgttggcactgct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49729451 |
catgttcaagtctcaatatctttccttccaatacctaatcatcatcctcctcctctcaatactgttcattcacttctctcaagctgacgttggcactgct |
49729550 |
T |
|
| Q |
197 |
tcccattacagccctccctttttacgtaagtgccccctcctatgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49729551 |
tcccattacagccctccctttttacgtaagtgccccctcctatgc |
49729595 |
T |
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