View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_83 (Length: 249)
Name: NF2495_high_83
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_83 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 13975429 - 13975182
Alignment:
| Q |
1 |
actccaaagtatagactcataatgatttaaaccaacaagagataatacccggatggtactgctaattaaacccaaatttagggcatttggccatttataa |
100 |
Q |
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| T |
13975429 |
actccaaagtatagactcataatgatttaaaccaacaagagataatacccggatcgtactgctaattaaacccaaatttagggcatttggccatttataa |
13975330 |
T |
|
| Q |
101 |
actgaaactcattcatgttatttactatttatttttattaattgaatctccctttaatggatttttctttcaagtgatatctaaaagacgcacgctcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13975329 |
actgaaactcattcatgttatttactatttatttttattaattgaatctccctttaatggatttttctttcaagtgatatctaaaagacgcacgctcttt |
13975230 |
T |
|
| Q |
201 |
cttttttgaactttagttaacacaaattccaaaccctttgcttctcct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13975229 |
cttttttgaactttagttaacacaaattccaaacccttttcttctcct |
13975182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 10950186 - 10950223
Alignment:
| Q |
5 |
caaagtatagactcataatgatttaaaccaacaagaga |
42 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||| |
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| T |
10950186 |
caaagtatagactcataatgatttaaactaataagaga |
10950223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 41727537 - 41727567
Alignment:
| Q |
12 |
tagactcataatgatttaaaccaacaagaga |
42 |
Q |
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| T |
41727537 |
tagactcataatgatttaaaccaacaagaga |
41727567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 55452097 - 55452065
Alignment:
| Q |
3 |
tccaaagtatagactcataatgatttaaaccaa |
35 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
55452097 |
tccaaagtgtagactcataatgatttaaaccaa |
55452065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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