View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_88 (Length: 246)
Name: NF2495_high_88
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_88 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 35893403 - 35893166
Alignment:
| Q |
9 |
aatatataaaataaataatcaattaagtatatactcccttcgttccaaattactatgtcattctaacaaatgcacatggattaaaaaatctaattaaagt |
108 |
Q |
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| T |
35893403 |
aatatataaaataaataatcaattaagtatatactcccttcgttccaaattactatgtcattctaacaaatgcacatggattaaaaaatctaattaaagt |
35893304 |
T |
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| Q |
109 |
gtcaagttattttttacattctaaaagtaccctcattgacatatattcattggtttaacaaaatgaataaatgtcatatacatagtgcaatgtattaata |
208 |
Q |
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| T |
35893303 |
gtcaagttattttttacattctaaaagtaccctcattgacatatattcattggtttaacaaaatgaataaatgtcatatacatagtgcaatgtattaata |
35893204 |
T |
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| Q |
209 |
aattgtgagtagtttccaaaggtggttaccattgattt |
246 |
Q |
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| T |
35893203 |
aattgtgagtagtttccaaaggtggttaccattgattt |
35893166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 4330915 - 4330750
Alignment:
| Q |
62 |
tatgtcattctaacaaatgcacatggattaaaaaatctaattaaagtgtcaagtt-attttttacattctaaaagtaccctcattgacatatattcattg |
160 |
Q |
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| T |
4330915 |
tatgtcattatagcaaatgcacatt-attaagaaatctaaataaagtgtcaagtttattttttgcattccaaaagtacc-tcattgg--tatattcattg |
4330820 |
T |
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| Q |
161 |
gtttaacaaaatgaat-aaatgtcatatacatagtgcaatgtattaataaattgtgagtagtttccaaag |
229 |
Q |
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| T |
4330819 |
gtttaacaaaatgaataaaatgtcacatacatagtccaatgtattaatgagttatgagtagttttcaaag |
4330750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 592319 - 592441
Alignment:
| Q |
62 |
tatgtcattctaacaaatgcacatggattaaaaaatctaattaaagtgtcaagtt-attttttacattctaaaagtaccctcattgacatatattcattg |
160 |
Q |
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| T |
592319 |
tatgtcattctaacaaatgcacatagattaacaaatcgaattaaagtgttaagttcattttttacattccaaaagtaccctcattg--gtatatgcattg |
592416 |
T |
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| Q |
161 |
gtttaacaaaatgaataaatgtcat |
185 |
Q |
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| T |
592417 |
gtttaacaaaataaataaatatcat |
592441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 33582259 - 33582167
Alignment:
| Q |
154 |
ttcattggtttaacaaaatgaataaatgtcatatacatagtgcaatgtattaataaattgtgagtagtttccaaaggtggttaccattgattt |
246 |
Q |
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| T |
33582259 |
ttcattggtttaacaaaatgaataaatgtcacatacatagtgccatgttttaatgagtagtgagcggttttcaaaggtggttatcattgattt |
33582167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 33592820 - 33592757
Alignment:
| Q |
115 |
ttattttttacattctaaaagtaccctcattgacatatattcattggtttaacaaaatgaataaat |
180 |
Q |
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| T |
33592820 |
ttattttttacattccagaagtaccctcattgg--tatattcattggtttaacaaaatgaataaat |
33592757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 33592742 - 33592664
Alignment:
| Q |
167 |
caaaatgaataaatgtcatatacatagtgcaatgtattaataaattgtgagtagtttccaaaggtggttaccattgattt |
246 |
Q |
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| T |
33592742 |
caaaatgaataaatgtcgcataaatagtgcaatgttttaataagttgtgagtggttttcaaagg-ggttatcattgattt |
33592664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 5052136 - 5052085
Alignment:
| Q |
62 |
tatgtcattctaacaaatgcacatggattaaaaaatctaattaaagtgtcaa |
113 |
Q |
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| T |
5052136 |
tatgtcattctaacaaatacacatggattaagaaatgcaattaaagtgtcaa |
5052085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 953279 - 953201
Alignment:
| Q |
168 |
aaaatgaataaa-tgtcatatacatagtgcaatgtattaataaattgtgagtagtttccaaaggtggttaccattgattt |
246 |
Q |
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|||||||||||| ||||| ||||||||| |||||||||||| | || |||||||||||||| ||||| | ||||||||| |
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| T |
953279 |
aaaatgaataaaatgtcacatacatagtccaatgtattaatgagttacgagtagtttccaaa-gtggtcatcattgattt |
953201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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