View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_9 (Length: 505)
Name: NF2495_high_9
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 2 - 488
Target Start/End: Original strand, 13756494 - 13756980
Alignment:
| Q |
2 |
ttcttgatagcactcaaaagatgattatttgagccttcaacttccttgcaacctggtctataacaaggaaccaaaacagcaaaactactatcagattcag |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13756494 |
ttcttgatagcactcaaaagatgattatttgagccttcaacttccttgcaacctggtctataacaaggaaccaaaacagcaaaactactatcagattcag |
13756593 |
T |
|
| Q |
102 |
actcatcatcatcactctgaaaatcagaaccatgaggctctaaccacccaatagaccaatctgagtcatcagattcagagcctgataaacaaccaccacc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13756594 |
actcatcatcatcactctgaaaatcagaaccatgaggctctaaccacccaatagaccaatctgagtcatcagattcagagcctgataaacaaccaccacc |
13756693 |
T |
|
| Q |
202 |
accatcagatgatactaaaacaacatcatactctctatcaactctcctctcttccctactctgccacttcttcctaaccttcctttgattatttgttccc |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13756694 |
accatcagatgatactaaaacaacatcatactctctatcaactctcctctcttccctactctgccacttcttcctaaccttcctttgattatttgttccc |
13756793 |
T |
|
| Q |
302 |
ttcatcaaaggaaacttcaaagactctctttctttcaaggaaaaactccattcagaagatggatttccattaacaataggctctttctccttactacctc |
401 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13756794 |
tttatcaaaggaaacttcaaagactctctttctttcaatgaaaaactccattcagaagatggatttccattaacaataggctctttctccttactacctc |
13756893 |
T |
|
| Q |
402 |
cccataaccaacaagacaaacgtgtcaaagacacagccatagttacaannnnnnncttctaatagcaaacttgcaaagctaaagggt |
488 |
Q |
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| T |
13756894 |
cccataaccaacaagacaaacgtgtcaaagacacatccatagttacaatttttttcttctaatagcaaacttgcaaagctaaagggt |
13756980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 27969617 - 27969544
Alignment:
| Q |
107 |
tcatcatcactctgaaaatcagaaccatgaggctctaaccacccaatagaccaatctgagtcatcagattcaga |
180 |
Q |
| |
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||||||||||| ||||| ||| |||||||| || ||||| ||||| |||||||| || |||||||||||||| |
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| T |
27969617 |
tcatcatcacttggaaaaccaggtccatgaggttccaaccatccaattgaccaatcagaatcatcagattcaga |
27969544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 28759141 - 28759379
Alignment:
| Q |
30 |
ttgagccttcaacttccttgcaacctggtctataacaaggaaccaaaacagcaaaacta---ctatcagattcagactcatcatcatca------ctctg |
120 |
Q |
| |
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|||||||||||| |||||||| || ||| |||||||||||||||||||||||||||| | | |||| ||| |||||||||||| || | |
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| T |
28759141 |
ttgagccttcaatctccttgcagccaggtgaataacaaggaaccaaaacagcaaaactatcaccaccagaatcatcatcatcatcatcatcattgctttc |
28759240 |
T |
|
| Q |
121 |
aaaatcagaaccatgaggctctaaccacccaatagaccaatctgagtcatcagattcagagcctga---taaacaaccaccaccaccatcagatgatact |
217 |
Q |
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||||||||||||| ||||||| | |||||||||||||||||| ||||||||||||||||| || || ||||| | | ||||||||||||||| || |
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| T |
28759241 |
aaaatcagaaccaagaggctccagccacccaatagaccaatcagagtcatcagattcagaaccagacagaaaacaccaatcaccaccatcagatggaaca |
28759340 |
T |
|
| Q |
218 |
aaaacaacatcatactctctatcaactctcctctcttcc |
256 |
Q |
| |
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|| |||||||||||||||||||||| | | ||||||||| |
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|
| T |
28759341 |
aacacaacatcatactctctatcaattgttctctcttcc |
28759379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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