View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_94 (Length: 242)
Name: NF2495_high_94
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_94 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31362529 - 31362758
Alignment:
| Q |
1 |
tttcggtatgggaggtgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaaga |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
31362529 |
tttcggtatgggaggcgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacttcaaga |
31362628 |
T |
|
| Q |
101 |
gctttctct--atatatatacaattcagaggtatcagctaagcactgaaaagatttctaaactacacacacatgtcattaaatatatatacagaatttct |
198 |
Q |
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||||||||| ||||| |||||||| |||| |||||| |||| |||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
31362629 |
gctttctctaaatatacatacaattgagagctatcagataagtactgaaaaaacttctaaactacacacacatgtcatcaaatatagatacagaatttct |
31362728 |
T |
|
| Q |
199 |
acatgagcaaaaaataatacatgatatttg |
228 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
31362729 |
acatgagcaaaaaataatacatgatatttg |
31362758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 31257792 - 31258001
Alignment:
| Q |
13 |
aggtgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagagctttctctata |
112 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| | |||| ||||||| || |
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| T |
31257792 |
aggtgtagcccagttaggtttgttgctgcatggatcagtgtcgaagttccaatctttcttaccaagtgatttagctataacttcaagaactttctc--ta |
31257889 |
T |
|
| Q |
113 |
tatatacaattcagaggtatcagctaagcactgaaaagatttctaaactacacacacatgtcattaaatatatatacagaatttctacatgagcaaaaaa |
212 |
Q |
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| T |
31257890 |
aatatacaattgagagctatcagctaagtactgaaaa-atttct--attttacaaacatgtcatcaaacatatatacagaatttctatatcagcaaaaga |
31257986 |
T |
|
| Q |
213 |
taatacatgatattt |
227 |
Q |
| |
|
|||||||||||||| |
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| T |
31257987 |
aaatacatgatattt |
31258001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 31416526 - 31416417
Alignment:
| Q |
2 |
ttcggtatgggaggtgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagag |
101 |
Q |
| |
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|||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
31416526 |
ttcggtatcgtaggcgtaacccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacttcaagag |
31416427 |
T |
|
| Q |
102 |
ctttctctat |
111 |
Q |
| |
|
|||||||||| |
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|
| T |
31416426 |
ctttctctat |
31416417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 31310093 - 31310257
Alignment:
| Q |
22 |
ccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagagctttctctatatatatacaa |
121 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | | |||||||||| | || ||||| || |
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| T |
31310093 |
ccagttagaattgttgctgcatggatcaatgctgaagttccaatccgtcttaccaagtgatttagctatatcttcaagagctttcac--taaatataaaa |
31310190 |
T |
|
| Q |
122 |
ttcagaggtatcagctaagcactgaaaagatttctaaactacacacacatgtcattaaatatatata |
188 |
Q |
| |
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|| |||| |||||| |||| |||||||| || ||||||||||||||||||||| ||||||||||| |
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|
| T |
31310191 |
tttagagctatcagttaagtactgaaaaatattttaaactacacacacatgtcatcaaatatatata |
31310257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 31283569 - 31283690
Alignment:
| Q |
16 |
tgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagagctttctctatatat |
115 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||| || || |
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| T |
31283569 |
tgtaaaccatttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctatactttcaagagctttctc--taaat |
31283666 |
T |
|
| Q |
116 |
atacaattcagaggtatcagctaa |
139 |
Q |
| |
|
|||||||| |||| |||||||||| |
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|
| T |
31283667 |
atacaattgagagctatcagctaa |
31283690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 31376716 - 31376837
Alignment:
| Q |
16 |
tgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagagctttctctatatat |
115 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||| || || |
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| T |
31376716 |
tgtagaccagttaggtttgttgctgcatggatcaatgtcgaagttccaatccttcttcccaagtgatttggctatactttcaagagctttctc--taaat |
31376813 |
T |
|
| Q |
116 |
atacaattcagaggtatcagctaa |
139 |
Q |
| |
|
|||||||| |||| |||||||||| |
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|
| T |
31376814 |
atacaattgagagctatcagctaa |
31376837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 31294994 - 31295088
Alignment:
| Q |
22 |
ccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagagctttctctatatata |
116 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
31294994 |
ccagttaggttggttgctacatggatcaatgtcgaagttccaatcattcttaccaagtgatttagctataacttcaagagctttctctacatata |
31295088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 31389006 - 31389130
Alignment:
| Q |
16 |
tgtaaaccagttaggtttattgctgcatggatcaatgtcaaagttccaatccttcttaccaagtgatttagctataacgtgaagagctttctct--atat |
113 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||| ||||||| | | ||||||||||||| |||| |
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| T |
31389006 |
tgtaaaccagataggttggttgctgcaaggatcgatgtcgaagttccaatctttcttaccaagtgattcagctatatcttcaagagctttctctaaatat |
31389105 |
T |
|
| Q |
114 |
atatacaattcagaggtatcagcta |
138 |
Q |
| |
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| |||||||| |||| ||||||||| |
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|
| T |
31389106 |
acatacaattgagagctatcagcta |
31389130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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