View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_high_99 (Length: 239)
Name: NF2495_high_99
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_high_99 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 49041085 - 49041308
Alignment:
| Q |
16 |
tcacgcacggccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcag |
115 |
Q |
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| T |
49041085 |
tcacgcacggccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaacccggccctttgcctcag |
49041184 |
T |
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| Q |
116 |
tataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagatt |
215 |
Q |
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| T |
49041185 |
tataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagatt |
49041284 |
T |
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| Q |
216 |
cttctgcaactcatcaagaacagc |
239 |
Q |
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| T |
49041285 |
cttctgcaactcatcaagaacagc |
49041308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 49040316 - 49040232
Alignment:
| Q |
29 |
tccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctc |
113 |
Q |
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| T |
49040316 |
tccatacggcactgttacatttaaaacctgccccaaatgcaatctgccacaccctatccccctttgaaactctacccttggcctc |
49040232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 15239692 - 15239496
Alignment:
| Q |
43 |
ttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccatagagaac |
142 |
Q |
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| T |
15239692 |
ttacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaac |
15239593 |
T |
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| Q |
143 |
tgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcatcaagaacagc |
239 |
Q |
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| T |
15239592 |
tactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaagatttttctccaactcatccaaaacagc |
15239496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 34053404 - 34053214
Alignment:
| Q |
30 |
ccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttca |
129 |
Q |
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| T |
34053404 |
ccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattca |
34053305 |
T |
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| Q |
130 |
taccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttct |
220 |
Q |
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| T |
34053304 |
taccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgccaatcactaaggtcaagatttttct |
34053214 |
T |
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