View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_105 (Length: 239)
Name: NF2495_low_105
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 176369 - 176593
Alignment:
| Q |
1 |
caggaatagccaacaaatcaggaggagtagatgatgatgatgattctgccttttggtgcctcctattattaagtctaaaagatgaagttgtgtttgtaga |
100 |
Q |
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| T |
176369 |
caggaatagccaacaaatcaggaggagtagatgatgat------tctgccttttggtgcctcctattattaagtctaaaagatgaagttgtgtttgtaga |
176462 |
T |
|
| Q |
101 |
agaggaaga---------ggaatcatcctctgttgttggagtactctgttgttgttcagggttattatgaaaagaagattgtgaagtagcatttgaatgt |
191 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176463 |
agaggaagaagaggaagaggaatcatcctctgttgttggagtactctgtt---gttcagggttattatgaaaagaagattgtgaagtagcatttgaatgt |
176559 |
T |
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| Q |
192 |
tgagaatgtttaagaagtagccatggaaggtttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
176560 |
tgagaatgtttaagaagtagccatggaaggtttt |
176593 |
T |
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