View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2495_low_108 (Length: 238)

Name: NF2495_low_108
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2495_low_108
NF2495_low_108
[»] chr8 (4 HSPs)
chr8 (20-155)||(14002083-14002222)
chr8 (152-238)||(14001533-14001612)
chr8 (97-147)||(15216069-15216119)
chr8 (98-139)||(30579033-30579074)
[»] chr1 (4 HSPs)
chr1 (97-147)||(13027298-13027348)
chr1 (97-142)||(35829195-35829240)
chr1 (97-147)||(32083542-32083592)
chr1 (97-147)||(37463659-37463709)
[»] chr4 (2 HSPs)
chr4 (98-147)||(16002350-16002399)
chr4 (97-147)||(39707897-39707947)
[»] chr3 (2 HSPs)
chr3 (97-146)||(9258321-9258370)
chr3 (97-147)||(29816940-29816990)
[»] chr7 (4 HSPs)
chr7 (97-147)||(36870086-36870136)
chr7 (97-147)||(21520230-21520280)
chr7 (97-147)||(32630043-32630093)
chr7 (97-138)||(20499544-20499585)
[»] chr2 (3 HSPs)
chr2 (97-142)||(13148757-13148802)
chr2 (97-147)||(24584403-24584453)
chr2 (97-142)||(876589-876634)
[»] chr6 (3 HSPs)
chr6 (97-147)||(5258947-5258997)
chr6 (97-147)||(5631252-5631302)
chr6 (97-147)||(20428434-20428484)
[»] chr5 (4 HSPs)
chr5 (97-147)||(3301284-3301334)
chr5 (97-147)||(3394146-3394196)
chr5 (111-148)||(14099775-14099812)
chr5 (97-142)||(43558608-43558653)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 14002222 - 14002083
Alignment:
Q  20 cagtgggtgagacagtgagattggttaaatttatgcggtctaggaatggaaacctgacattt-----gaagtctttttcataggatgtacttaccgaaca 114  Q
    |||||| |||||| ||||| |||| |||| || || ||||||||||||||||||||||| ||     |||||||||||||||||||||||||||| ||||    
T  14002222 cagtggctgagacggtgaggttggctaaaattctgtggtctaggaatggaaacctgacaattatattgaagtctttttcataggatgtacttaccaaaca 14002123  T
Q  115 catccaagagctagcacggagatgtatgtttttcgcacata 155  Q
    ||| |||||||||||||| ||||||||||||||||||||||    
T  14002122 cat-caagagctagcacgaagatgtatgtttttcgcacata 14002083  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 14001612 - 14001533
Alignment:
Q  152 catagtttgacactagcctgttagtagcatttaatctctcagcgatgacttgtaagttgtaacttccttgttacagaacttggaaat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  14001612 catagtttgacactagcctgttagtagcatttaatctctcagcgatgactt-------gtaacttccttgttacagaacttggaaat 14001533  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 15216119 - 15216069
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||||||||    
T  15216119 ggatgtactgacagaacacatccaagagttagcaccgagatgtatgttttt 15216069  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 30579074 - 30579033
Alignment:
Q  98 gatgtacttaccgaacacatccaagagctagcacggagatgt 139  Q
    ||||||||||| |||||||| ||||||||||||| |||||||    
T  30579074 gatgtacttacagaacacatacaagagctagcactgagatgt 30579033  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 13027348 - 13027298
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  13027348 ggatgtacttacagaaaacatccaagagctagcactgagatgtatgttttt 13027298  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 35829240 - 35829195
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 142  Q
    |||||||||||| |||||||||||||||||||||| || |||||||    
T  35829240 ggatgtacttacagaacacatccaagagctagcaccgatatgtatg 35829195  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 32083592 - 32083542
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  32083592 ggatgtactgacagaacacatccaagagttagcaccgagatgtatgctttt 32083542  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 37463709 - 37463659
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||||| ||||    
T  37463709 ggatgttcttacggaacacatccaagagttagcaccgagatgtatgctttt 37463659  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 16002350 - 16002399
Alignment:
Q  98 gatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  16002350 gatgtacttacggaacacatccaagagttagcaccgagatgtatgttttt 16002399  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 39707897 - 39707947
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    |||||||||||| ||||||||||||||| | |||| || ||||||||||||    
T  39707897 ggatgtacttacagaacacatccaagagtttgcaccgatatgtatgttttt 39707947  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 9258321 - 9258370
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgtttt 146  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  9258321 ggatgtacttacggaacacatccaagagttagcaccgagatgtatgtttt 9258370  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 29816940 - 29816990
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||||||  ||||||||| |||| |||||| |||||||||||||||    
T  29816940 ggatgtacttacaaaacacatcctagagttagcaccgagatgtatgttttt 29816990  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 36870136 - 36870086
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || |||||||||||||||||||||| |||||||||| ||||    
T  36870136 ggatgtactgacggaacacatccaagagctagcaccgagatgtatgctttt 36870086  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 21520280 - 21520230
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||| |||| ||||||||||||||| |||||| |||||||||| ||||    
T  21520280 ggatgtatttacggaacacatccaagagttagcaccgagatgtatgctttt 21520230  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 32630043 - 32630093
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  32630043 ggatgtactaacggaacacatccaagagttagcaccgagatgtatgctttt 32630093  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 20499544 - 20499585
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatg 138  Q
    |||||||||| | |||||||||||||||||||||| ||||||    
T  20499544 ggatgtacttgcggaacacatccaagagctagcaccgagatg 20499585  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 13148757 - 13148802
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 142  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||    
T  13148757 ggatgtacttacagaacacatccaagagctagcactaagatgtatg 13148802  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 24584453 - 24584403
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| || ||| |||||||||||||||    
T  24584453 ggatgtactaacggaacacatccaagagttatcaccgagatgtatgttttt 24584403  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 876589 - 876634
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 142  Q
    |||||||||||| |||||||||||||||| |||||  |||||||||    
T  876589 ggatgtacttacggaacacatccaagagcgagcaccaagatgtatg 876634  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 5258997 - 5258947
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  5258997 ggatgtactgacggaacacatccaagagttagcaccgagatgtatgctttt 5258947  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 5631252 - 5631302
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||| ||||||||    
T  5631252 ggatgtactgacggaacacatccaagagttagcaccgagatgcatgttttt 5631302  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 20428484 - 20428434
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    |||||||||||| |||||||| |||||| |||||| |||||||||| ||||    
T  20428484 ggatgtacttacggaacacattcaagagttagcaccgagatgtatgctttt 20428434  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 3301284 - 3301334
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  3301284 ggatgtactgacagaacacatccaagagttagcaccgagatgtatgctttt 3301334  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 3394146 - 3394196
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 147  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  3394146 ggatgtactgacggaacacatccaagagttagcaccgagatgtatgctttt 3394196  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 14099775 - 14099812
Alignment:
Q  111 aacacatccaagagctagcacggagatgtatgtttttc 148  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  14099775 aacacatgcaagagctagcaccgagatgtatgtttttc 14099812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 43558653 - 43558608
Alignment:
Q  97 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 142  Q
    |||||||||||| |||||||||||||||||| ||| ||||| ||||    
T  43558653 ggatgtacttacggaacacatccaagagctaacaccgagatatatg 43558608  T

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