View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_117 (Length: 237)
Name: NF2495_low_117
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_117 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 25118385 - 25118165
Alignment:
| Q |
17 |
aacagcttgttcaacattggttttcacttgagtactattaaaccctgcttctctcataaccctacttacactaggatcatctaaaattgaaataatgagt |
116 |
Q |
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| T |
25118385 |
aacagcttgttcaacattggttttcacttgagtactattaaaccctgcttctctcataaccctactaacactaggatcatctaaaattgaaatgatgagt |
25118286 |
T |
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| Q |
117 |
tgttcaagctcaatcttcaccgtcaaaagcggttgttgttgattctcaatcgatccacgacgttgatgagcttgagcgcgcttaaaagcggcaactaaag |
216 |
Q |
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| T |
25118285 |
tgttcaagctcaatcttcaccgtcaaaagcggttgttgttgattctcaatcgatccacgacgttgatgagcttgagcgcgcttaaaagcggcaactaaag |
25118186 |
T |
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| Q |
217 |
catttgagatagaaggatact |
237 |
Q |
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| T |
25118185 |
catttgagatagaaggatact |
25118165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 53818250 - 53818090
Alignment:
| Q |
63 |
gcttctctcataaccctacttacactaggatcatctaaaattgaaataatgagttgttcaagctcaatcttcaccgtcaaaagcggttgttgttgattct |
162 |
Q |
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| T |
53818250 |
gcttctctcatgaccctactaacactaggatcatcaagaattgatatgatgagttgttccaattcaactttgacagcaagaagcggttgttgttgctgtt |
53818151 |
T |
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| Q |
163 |
caatcgatccacgacgttgatgagcttgagcgcgcttaaaagcggcaactaaagcatttga |
223 |
Q |
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| T |
53818150 |
caggataaccacgacgttgatgagcttgagcacgtttcaaagctgccatcaaagcatttga |
53818090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 52806676 - 52806742
Alignment:
| Q |
63 |
gcttctctcataaccctacttacactaggatcatctaaaattgaaataatgagttgttcaagctcaa |
129 |
Q |
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|||||||||||||||||||| |||||||||||||| | || || ||||| || ||||||||||||| |
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| T |
52806676 |
gcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaagctcaa |
52806742 |
T |
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