View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_121 (Length: 236)
Name: NF2495_low_121
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_121 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41703018 - 41702800
Alignment:
| Q |
1 |
taactaaccttgcttattgaatatgtatatatcacacagatctagctgatagaatcatggaaggatgcatggcgaatggtaaatgagagagagctttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703018 |
taactaaccttgcttattgaatatgtatatatcacacagatctagctgatagaatcatggaaggatgcatggcgaatggtaaatgagagagagctttctt |
41702919 |
T |
|
| Q |
101 |
tagtccactcatgggttgccgtaagatttaattagctgctgactcattcatccaaatgctgagtaaaatatactcaaagtatactctgcaaatgagtgaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41702918 |
tagtccactcatgggttgctgtaagatttaattagctgctgactcattcatccaaatgctgagtaaaatatactc-aagtatactctgcaaatgagtgaa |
41702820 |
T |
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| Q |
201 |
tgatgcgggagacaaattga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
41702819 |
tgatgcgggagacaaattga |
41702800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 2425538 - 2425672
Alignment:
| Q |
88 |
agagagctttctttagtccactcatgggttgccgtaagattt-aattagctgctgactcattcatccaaatgctgagtaaaatatactcaaa-gtatact |
185 |
Q |
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||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |
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| T |
2425538 |
agagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattcatccaaatgttgagtaaaatatatagaaacatatact |
2425637 |
T |
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| Q |
186 |
ctgcaaatgagtgaatgatgcgggagacaaattga |
220 |
Q |
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| T |
2425638 |
catcaaatgagtgaatgatgcgggagacaaattga |
2425672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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