View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2495_low_125 (Length: 231)
Name: NF2495_low_125
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_125 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 51351123 - 51351046
Alignment:
| Q |
128 |
gagaaacttcagccacaactgtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatata |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51351123 |
gagaaacttcagccacaactgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatata |
51351046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 51351206 - 51351131
Alignment:
| Q |
1 |
gcatgtaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattcaatc |
76 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51351206 |
gcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattcaatc |
51351131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 51360494 - 51360415
Alignment:
| Q |
128 |
gagaaacttcagccacaact--gtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatata |
205 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||||| |||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
51360494 |
gagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatata |
51360415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 40020304 - 40020263
Alignment:
| Q |
74 |
atctataactactctttatatcaactccataaaagagatttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40020304 |
atctataactactctttatatcaactccataaaagagatttg |
40020263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University