View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2495_low_126 (Length: 229)
Name: NF2495_low_126
Description: NF2495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2495_low_126 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 45628473 - 45628264
Alignment:
| Q |
1 |
caagcaacacataatgcttataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactctattaactataaatgtgaagt |
100 |
Q |
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| T |
45628473 |
caagcaacacataatgcttataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactctattaactacaaatgtgaagt |
45628374 |
T |
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| Q |
101 |
gtgaacaactattattactggataatagagattgacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaaca |
200 |
Q |
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|||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628373 |
gtgaacaactattattactggagaatagagattaacacatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaaca |
45628274 |
T |
|
| Q |
201 |
cctttcacaa |
210 |
Q |
| |
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|||||||||| |
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| T |
45628273 |
cctttcacaa |
45628264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 30784607 - 30784417
Alignment:
| Q |
20 |
ataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactctattaactataaatgtgaagtgtgaacaactattattact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30784607 |
ataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactctattaactacaaatgtgaagtgtgaacaactattattact |
30784508 |
T |
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| Q |
120 |
ggataatagagattgacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacacctttcacaa |
210 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30784507 |
ggagaatagagattaacgcatgtataatgagttaccaagatgagtgcagcaattgcctgaacaagccgatgaagcaaaacacctttcacaa |
30784417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 43898206 - 43897997
Alignment:
| Q |
1 |
caagcaacacataatgcttataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactctattaactataaatgtgaagt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
43898206 |
caagcaacgcataatgcttataactaaaagtgcttttaacttaactacaaaacagaataagattttcaactataaactctattcactacaaatgtgaagt |
43898107 |
T |
|
| Q |
101 |
gtgaacaactattattactggataatagagattgacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaaca |
200 |
Q |
| |
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|||||||||||| |||||||| |||||||||| || |||| ||||| ||||||||||||||| | ||||||||||||||||||| |||||||||||| |
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| T |
43898106 |
gtgaacaactatagttactggagaatagagattaacatgtgtagaatgacttaccaagatgagtgcaacaattgcctgaacaagctgctgaagcaaaaca |
43898007 |
T |
|
| Q |
201 |
cctttcacaa |
210 |
Q |
| |
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|||||||||| |
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|
| T |
43898006 |
cctttcacaa |
43897997 |
T |
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